Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0128 ATGTTGAAACTTTATCGCATGCTTCCTTCATCTTCATCTTCCAGGAATCAGTTATTGCAAATTCTTTCGTATAGGAAACTTGAAGTTAGGGATTTCTCCACTTCCACAAATAACTATTCTGCTGCTAAAGGATATGCTTCAGATCGTATATTTGCTCCTTATTCTGTTTACAAGGGAAAAGCTGCATTCTCACTCAGTCCTTGTCTTCCAACTTTCACTAAATTGGATTCTGGGGCTCTTGTGGTTGATCGTCGCGGTTCAATAATGATGAGTTTCATGCCTGCTATTGGGGAGCGCAAATATGACTCCGACAAGAAACAAAGATTTGCCCTATCAGCTACTGAAGTTGGTTCTTTGATAGCCATGGGTCCCCAAGATTCATGTGAATTCTTTCATGACCCCTCAATGAAGTCAAGTAATGCTGGTCAAGTAAGGAAGAGCTTATCAATTAAGCCTCATAGCAATGGCTACTTTGTCTCTCTGAATGTTGTTAACACCCTGTTGAATACGAAAGACAATTTCAGTGTTCCTGTTACAACTGCTGAGTTTGCTGTGATGAAGACAGCTTGCAGTTTTGCATTGCCACACATTATGGGTTGGGATCGTCTAACTAGTCCGACTAATCAGCAGTCAAGTGGGAAAGTCAGCTTTCAACCGAAGACGAACTCACACATTTTAGACTTGGAATGGGAAAAGTGA 699 0.4106 MLKLYRMLPSSSSSRNQLLQILSYRKLEVRDFSTSTNNYSAAKGYASDRIFAPYSVYKGKAAFSLSPCLPTFTKLDSGALVVDRRGSIMMSFMPAIGERKYDSDKKQRFALSATEVGSLIAMGPQDSCEFFHDPSMKSSNAGQVRKSLSIKPHSNGYFVSLNVVNTLLNTKDNFSVPVTTAEFAVMKTACSFALPHIMGWDRLTSPTNQQSSGKVSFQPKTNSHILDLEWEK* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0128 232 Pfam Whirly transcription factor 56 188 IPR013742 GO:0003697|GO:0006355|GO:0006952
Tpr6g0128 232 Gene3D Transcriptional Coactivator Pc4; Chain A 40 213 IPR009044 GO:0003677|GO:0006355
Tpr6g0128 232 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 26 232 IPR013742 GO:0003697|GO:0006355|GO:0006952
Tpr6g0128 232 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 26 232 - -
Tpr6g0128 232 SUPERFAMILY ssDNA-binding transcriptional regulator domain 47 231 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0128 Tpr-Chr6 1101814 1105736 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0128 29 232 Whirly Transcription Factor Family AT1G71260 60.731 1.40e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Tpr6g0128 Whirly 1.3e-52 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0128 - - gmx:100817863 346.665