Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0113 ATGGCGGCGGCGACGGCGAAGAGAGATGAATCATCGGAATTAAAGGAGCGGTTATGGAAACTCGTTAAAACTATAGTTGAATCCGATGACTATAGTTTACAAATCGCCGATGATGCAATCGCTACTCTTTCTTCTCTCAAGGATTTCAAATTCAACAATAATGGAACAAAAAACTCTTTCTCTTCTAAATTGGACCAATTTACCCTTCCTCCTGAATTTCGTTGCCCTATTTCCACTCAATTGATGATCGATCCTGTTATCTTGTCCACCGGCCAGACTTATGATCGGCCGTTTATCCAGAGGTGGTTGAATGAAGGCAATAGGACATGCCCTCAAACCCAGCAAGTTCTATCTCACACAATTCTTACTCCTAATTACTTGGTCCGAGACATGATTGCGCAGTGGTGTAAGGAGCATGGACTTGAGCTACCAAAGCCTAATACCCGGGACACTGATGAAGTTGTGACTGATGCAGACAAAGACCGTTTAAATACATTGCTTCATAAGTTATCATTGTCTGTTTCTGATCAGAAAGCAGCTGCGAAAGAGCTTCGCTTGTTAACGAAGCGGACACCTTCGTTTCGAACCCTTTTTAAGGAGTCTGGTGATGTGATCACGCAGGTGCTTCGTCCATTATCGCCGGGCAGTGCTTGTACTCATCCTGATCTTCAAGAGGATTTGATCACAACTGTTCTGAATCTCTCAATTCATGACGATAATAAGAAACTGTTTGCAGAAGATCCAAACCTCATTAACCTGCTGATTGATGCCTTGAAATGGGGAACCATTCAAACAAAAAGCAATGCTGCAGCAGCTATTTTTACATTATCAGCTCTTGATTCCAACAAACACATCATTGGGAAATCTGGAGCTATCAAACATTTGATTGGCGTTCTAGATGAGGGACATCAAATTGCCATGAAAGATGCGGCATCGGCCATATTTAACCTATGTCTTGTCCACGAGAATAAAGGGAGGACAGTACGAGAAGGGGCAGTTAAGGTCATTTTGAATAAGATCACGAACCACATTCTAGTTGATGAGCTGTTGGCTATACTGGCACTCCTCTCCAGTCATCCCACAGCTGTTGAAGAAATGGGCCATCGTGGCGCCGTTACTTTCTTACTGAGTACTATAAGGGAAAGCACATCAGAAAGGTGCAAGGAAAATTGTGTTGCAATCCTATATACAATCTGTTATAGTGATAGAACAACGTGGAAGGAAATCAAAGAAGAAGAAAAAACCAATGGTTCACTGTCAAAGCTTGCACAATGCGGAACTTCAAGGGCGAAAAGGAAGGCTAGCAGTATTCTAGAGAGGGTTAACAGATCTCCATCGTTAACTCACACTGCTTAG 1356 0.427 MAAATAKRDESSELKERLWKLVKTIVESDDYSLQIADDAIATLSSLKDFKFNNNGTKNSFSSKLDQFTLPPEFRCPISTQLMIDPVILSTGQTYDRPFIQRWLNEGNRTCPQTQQVLSHTILTPNYLVRDMIAQWCKEHGLELPKPNTRDTDEVVTDADKDRLNTLLHKLSLSVSDQKAAAKELRLLTKRTPSFRTLFKESGDVITQVLRPLSPGSACTHPDLQEDLITTVLNLSIHDDNKKLFAEDPNLINLLIDALKWGTIQTKSNAAAAIFTLSALDSNKHIIGKSGAIKHLIGVLDEGHQIAMKDAASAIFNLCLVHENKGRTVREGAVKVILNKITNHILVDELLAILALLSSHPTAVEEMGHRGAVTFLLSTIRESTSERCKENCVAILYTICYSDRTTWKEIKEEEKTNGSLSKLAQCGTSRAKRKASSILERVNRSPSLTHTA* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0113 451 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 6 449 - -
Tpr6g0113 451 SUPERFAMILY RING/U-box 63 145 - -
Tpr6g0113 451 ProSiteProfiles U-box domain profile. 68 142 IPR003613 GO:0004842|GO:0016567
Tpr6g0113 451 SMART Ubox_2 72 135 IPR003613 GO:0004842|GO:0016567
Tpr6g0113 451 CDD RING-Ubox_PUB 73 115 IPR045210 -
Tpr6g0113 451 SUPERFAMILY ARM repeat 173 441 IPR016024 -
Tpr6g0113 451 PANTHER U BOX DOMAIN-CONTAINING 6 449 - -
Tpr6g0113 451 Pfam U-box domain 70 139 IPR003613 GO:0004842|GO:0016567
Tpr6g0113 451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 142 IPR013083 -
Tpr6g0113 451 Gene3D - 164 446 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0113 Tpr-Chr6 894314 897013 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0113 131 451 U-box Gene Family AT3G07360 58.232 2.49e-124 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0113 - - gmx:100806619 633.254