Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0110 ATGCCATTTGGTGAATGTGGGGATGTGAAAGAGGATATAAGCAAATGGGGTAATGGTTTTCCAACAACTCTATGCTGTCGAAATGCACTGACCCTTCTGTCAGATGCCATGGCGTCACAAGCCCGTAACAGAACAGGACAAGTGTTCCTTTCTCAAGAACAATGGCAGAGTTGCAACAAATCATTTCATCCACAACAAGGGATGTCACTGTCTTCATGTGGATTTGATAATATTTACTTTGGTAGCTCTAAATGCTCCAGCTCAACTTTGCTATATGTTCAGAACTTGCAACCGTACACTGATGCATTGAACCAATGCAGCCACTTCGATCATTCGCTTGATGTGTCGTGTGCAGAATGTACAGGTGCAATATTGAACCTGAGAGATGATTTGTATCAAAAACTAATCGACAAGGACAACAACGACACTGAGAGAGCCATATGTGGCGTAGCAGCTCTTGTTTCTGTTGCAGCCGAACAAAAAGATGACCCTTTCCTTGCAGACAAATTCTTGCGCTGCTTGCCACCTCCATCAGTAAATATAAAGAAATCATCAGGGAAGAAACTTGTGTTGGGAGCATTGGTGGTAGCTATCGTAGCATTATTGGTGATTGTTTTTGTGGTAAAATGTGTATCGAAGAAGAAGCCTATTAAGAAGAAGCATGTTCAATTGAAACAGATAACTACTTGGTCTGGATTGTACTGGTTCACAAAAACTGAAATTGAAAATGCAATGAATTTTGAAGACGAAAAGATAAACCTTGGACGTGGTAGTGCAGGTGAGGTGTATAGAGGCGTTTTGCCTAGTGGTCAAGTTGTAGCCATCAAGCATTTGATAAAGAATAACACCTCTAGTTCTGATTCTTTCACCCGAGAACTCGCTGGTCTTTCGAGGCTTCGTCACCCAAACCTTGTTTGCTTGTTTGGTTGTTGCATGGAAGATGGTGAGAGATATTTAGTCTACGAATTTTGCGCCAATGGAAATCTTGCTCAACATCTCTTGAGAAGAGACAGCCATTTGACATGGGAAACAAGAGTGAGGATTTTGAAAGAATGTTCATTTGCACTTAAGTACCTTCATCAACATATAGAGGGTTGTGTCGTCCATCGAGATATCAAGCTTACGAACATTCTTTTGACTGAGAAATACGAAGCCAAACTGTCGGATTTTGGTTTGTCGAGGATGATGGGGATGGAAGAGAGCAAGGTTTTTACTGATGTTAGAGGAACCATAGGTTACATGGATCCGGAGTACATGAGCAATGCAAAGTTAACATGTGCAAGTGATGTATATAGTTTCGGAATTGTTGCTTTGCAAATTCTGTCTGGACAGAAAGTCATAGAATTGGATCTTGATGCTAGAGATCAACTCACTAGAAAGGCAAGAGATGTGAGTTTGGGAAAGCGTCCATTGTCGGATTTTGTAGACTCGCGACTAAAGGGACAAGTTGATAAGGATGATTTTGGAGACATTTTACAGATTGCAGTACTTTGTGTTGCCAAATCAAGCACAGGACGCCCAACAATTGGGGTTGTTTTTGACGAATTGGACAAAGTCTACGGGAACATAGAGGCGCGCAACAAGGCAACCCCATCAACATCAACATCTAGCTCTAATTGA 1620 0.4154 MPFGECGDVKEDISKWGNGFPTTLCCRNALTLLSDAMASQARNRTGQVFLSQEQWQSCNKSFHPQQGMSLSSCGFDNIYFGSSKCSSSTLLYVQNLQPYTDALNQCSHFDHSLDVSCAECTGAILNLRDDLYQKLIDKDNNDTERAICGVAALVSVAAEQKDDPFLADKFLRCLPPPSVNIKKSSGKKLVLGALVVAIVALLVIVFVVKCVSKKKPIKKKHVQLKQITTWSGLYWFTKTEIENAMNFEDEKINLGRGSAGEVYRGVLPSGQVVAIKHLIKNNTSSSDSFTRELAGLSRLRHPNLVCLFGCCMEDGERYLVYEFCANGNLAQHLLRRDSHLTWETRVRILKECSFALKYLHQHIEGCVVHRDIKLTNILLTEKYEAKLSDFGLSRMMGMEESKVFTDVRGTIGYMDPEYMSNAKLTCASDVYSFGIVALQILSGQKVIELDLDARDQLTRKARDVSLGKRPLSDFVDSRLKGQVDKDDFGDILQIAVLCVAKSSTGRPTIGVVFDELDKVYGNIEARNKATPSTSTSSSN* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0110 539 Pfam Protein kinase domain 253 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g0110 539 SMART serkin_6 247 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g0110 539 SUPERFAMILY Protein kinase-like (PK-like) 230 517 IPR011009 -
Tpr6g0110 539 Pfam SPARK 8 143 IPR043891 -
Tpr6g0110 539 Gene3D Phosphorylase Kinase; domain 1 218 323 - -
Tpr6g0110 539 PANTHER OS01G0253100 PROTEIN 4 526 IPR045271 GO:0004714|GO:0006468
Tpr6g0110 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 367 379 IPR008271 GO:0004672|GO:0006468
Tpr6g0110 539 ProSiteProfiles Protein kinase domain profile. 248 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g0110 539 Gene3D Transferase(Phosphotransferase) domain 1 324 536 - -
Tpr6g0110 539 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 40 4 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0110 Tpr-Chr6 871129 873465 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0110 231 519 Receptor kinase-like Gene Family AT5G66790 39.130 3.24e-56 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Tpr6g0110 Pkinase 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0110 - - mtr:MTR_7g116650 882.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0110 6 871129 873465 Tpr5g1340 5 26203747 26207248 PCT