LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr6g0109	ATGAATTGCTTTCCTTGTTTCACCTCTCAAAAGAGTAAGAAAAGCAATAGCAAGAGGGAACATGGGGATGCACAACCACAGGAAAACAACAACCTTATAACCAGAACACCAGATATCAAGAAACCAAAGCCAGAAGAACCAGCCCAAGTTGACACAACAACTATTCAAGCACAAAATTTCACTTTCCGCGAGTTAGCAATTGCAACAAAGAATTTTCGCCAAGAATGCTTGTTGGGAGAAGGTGGTTTTGGCAGAGTTTACAAAGGAACAATTCCTGCAACTGGACAGGTGATAGCAGTGAAGCAACTTGACCGAAATGGGATTCAAGGCAGTAAAGAATTTCTGGTTGAGGTTTTGATGTTGAGTCTCTTAAACCATGAAAATCTTGTCAAACTCTCCGGTTATTGTGCTGATGGTGATCAACGTCTTTTGGTCTATGAATACATGCCAGCGGGTTCTCTAGAAACTCGTCTTCTTGAGAGAAAACCTGATCAAGCTATATTAGATTGGTATGAAAGAATGAAAATAGCAGCTCATGTTGCAAAAGGACTATGGTACTTGCATGACAAGGCAAATCCCTCAGTTATATATAGGGACTTGAAATCATCGAACATCTTGCTTGATAATGAACTTCATGCAAAACTATCTGATTATGGACTTGCAAAACTTGCTGGTAAAGATAAGATGAACATTGTTCCTACAAGAGTCATGGGTACTTATGGTTATAGTGCTCCTGAGTATGTAAGAACAGGTAACCTCACTTTGAAGTCAGATGTATACAGTTTTGGAGTTGTCTTGCTTGAGCTCATAACTGGAAGACGAGCTGTTGACACCACAAGATCGCACGACGAGCAAAATCTAGTTTCATGGGCACAACCAATATTTAGAGATCCAAAAAAATATGGAGAGTTGGCTGACCCAAACCTCGGTACAAATTACCCGGAAAAGGATCTGAATCAAGTTGTTGCGATTGCAGCAATGTGCTTACAGGAGGAATCAGCAGCGCGTCCTTTGATGAGCGATGTTGTAACTGCTTTGAGTTTTCTTTCTACTACTCCTCCTCCTCCAGGCACTGCTCCTGCACCAACTCCACCTCCCAAATCCACCTCCCAGAAGACTGTTTCCACTGCCGACGAAAGTTCTGATGAAGAGCGTTCGGATCACGAGGACAATCATGATATTGCAGCAGCTAGTGGAAAATACGAAGAATGTGATGATGCATCAGACAGTGAAAGTGATTATTATGAGGACGAAAACCAACATTATAGTCCACAAGATGGTAAAGAAACAAAGCAGTTCTACTCCAAATCAAGCAACAAAAGCGGTACCAAATCAAAGAAAAGTTCCAGTTCCAAAAAGCATGGGGCGGATGGAATTTTAACTCAGAAAAGCAGTAAGAAGGGCAGTAAAAAATCTTCTGCAAGATTTGCAAGTAAATCATCTGATAGCAGCAGCGACGAGGAGTCACGGGATGAAGGTGTTCTTCTCAAGCGTGGTGACAGTAGGCCATCAAATGATGCAAATGGATATTCTTTTGGCCTAACAAGCAGTGATAGTGGGGAAGCATCACGTTCAGAAGTTCAACATTTTGATCGCATGAGCACGGGGACATCTGAGGAGGGAAGTTTTCACCATTTAGAACGTTCCAGCAGCAGAGGATCAGATGAGGGAAGTGTTCATTCATGA	1686	0.4205	MNCFPCFTSQKSKKSNSKREHGDAQPQENNNLITRTPDIKKPKPEEPAQVDTTTIQAQNFTFRELAIATKNFRQECLLGEGGFGRVYKGTIPATGQVIAVKQLDRNGIQGSKEFLVEVLMLSLLNHENLVKLSGYCADGDQRLLVYEYMPAGSLETRLLERKPDQAILDWYERMKIAAHVAKGLWYLHDKANPSVIYRDLKSSNILLDNELHAKLSDYGLAKLAGKDKMNIVPTRVMGTYGYSAPEYVRTGNLTLKSDVYSFGVVLLELITGRRAVDTTRSHDEQNLVSWAQPIFRDPKKYGELADPNLGTNYPEKDLNQVVAIAAMCLQEESAARPLMSDVVTALSFLSTTPPPPGTAPAPTPPPKSTSQKTVSTADESSDEERSDHEDNHDIAAASGKYEECDDASDSESDYYEDENQHYSPQDGKETKQFYSKSSNKSGTKSKKSSSSKKHGADGILTQKSSKKGSKKSSARFASKSSDSSSDEESRDEGVLLKRGDSRPSNDANGYSFGLTSSDSGEASRSEVQHFDRMSTGTSEEGSFHHLERSSSRGSDEGSVHS*	562

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr6g0109	561	MobiDBLite	consensus disorder prediction	426	445	-	-
	Tpr6g0109	561	PANTHER	RECEPTOR KINASE-LIKE PROTEIN	1	431	-	-
	Tpr6g0109	561	PANTHER	OS07G0668900 PROTEIN	1	431	-	-
	Tpr6g0109	561	MobiDBLite	consensus disorder prediction	541	561	-	-
	Tpr6g0109	561	CDD	STKc_IRAK	78	346	-	-
	Tpr6g0109	561	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	195	207	IPR008271	GO:0004672\|GO:0006468
	Tpr6g0109	561	MobiDBLite	consensus disorder prediction	377	405	-	-
	Tpr6g0109	561	Gene3D	Phosphorylase Kinase; domain 1	35	148	-	-
	Tpr6g0109	561	MobiDBLite	consensus disorder prediction	504	540	-	-
	Tpr6g0109	561	MobiDBLite	consensus disorder prediction	353	367	-	-
	Tpr6g0109	561	Gene3D	Transferase(Phosphotransferase) domain 1	149	350	-	-
	Tpr6g0109	561	SMART	serkin_6	72	349	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr6g0109	561	Pfam	Protein kinase domain	74	343	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr6g0109	561	ProSitePatterns	Protein kinases ATP-binding region signature.	78	101	IPR017441	GO:0005524
	Tpr6g0109	561	MobiDBLite	consensus disorder prediction	1	51	-	-
	Tpr6g0109	561	MobiDBLite	consensus disorder prediction	481	499	-	-
	Tpr6g0109	561	ProSiteProfiles	Protein kinase domain profile.	72	349	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr6g0109	561	SUPERFAMILY	Protein kinase-like (PK-like)	58	373	IPR011009	-
	Tpr6g0109	561	MobiDBLite	consensus disorder prediction	349	561	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr6g0109	Tpr-Chr6	867687	870882	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr6g0109	1	389	Glycoside Hydrolase	AT3G07070	59.360	6.62e-167	478

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-1	Tpr6g0109		Pkinase	3.8e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr6g0109	-		-	gmx:100807682	627.476