Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0078 ATGACTCTTTTCATTGCAGGTTTGAGGATTGGAGATCAGAGTCATCTTAGTGTAAGTTCTGTTTTGAAGAGTATTGGAAGAAGATTTGAGAGTGGATTAGAGAAGATGAAGAAATTCAGAAGACTTGAGAGTGGATTAGAGAAGATGAAGAAATTCAGAAGATCGTCTTCTTCTTTTTTTGAAATTCTTGTTTTTGAAATTCTTGATCCACAGGGGCCAATGCTTCAGAAATGGAACGAAATCTTTCTAATCACATGTGTTATGGCAGTTTCTGTGGATCCTCTTTTCTTTTATATTCCAGTCATTGTCGGAAAAAACAAGTGTCTTGATTTGAATGAACCATTGCAGACTACTGCTAGTGTTCTTCGCACATTCTTTGATCTTTTCTACATTCTTCGCATCATCTTTCAGTTTAGAACTGGATTTCTTGCACCTTCTTCTCGTGTTTTTGGAAGAGGTGAACTCATGAACGATCCTTTCGCCATAATGAAAAGATACTCATTGAGTTCTCATTTCATCATCGACATTCTTTCAATTATTCCACTTCCACAGGTTATTGCTTTGGCAATAATTCCACACTTGAAAAGCTCAAGTCCATTTTTAGCAAAGGACTTTTTGAAGTATACAGTATTAATTCAGTATGTGCCGAGACTATTGCGGATTCGTCCACTATTCGAAGAAGTAACTAGAACTTCAGGCATATTGGCAGATACACCATGGGCTAGGGCTGTCTTCAATCTTTTACTCTACCTCCTAGCCAGTCATGTGGTTGGAGCTAACTGGTATCTACTTTCGGTAGAATCACAGGTGCGGTGTTGGTACAGAGAGATGGACAATGATTCCCTCTTTCATGCATCATATTTGGGCTGTGGGCAGCAAAATGAAAGAGTCTTCCCACTTCTCAATAGTACATGTATTTTTGTTGACCCTGATGAAATCAAGGACACAAAGACCTTCAATTTTGGAATATTTTCCGATGCTCTACAATCGCTCGTGGTAGATTCAACCACGAAATTTCCTTACAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATTTAAGTTCTCTTGGACAAAACCTCAAGACAAGTACTTACCTCCCGGAAATAGCCTTTGCGTTTTTCATTTCCATCTTTGGATTGGTTTTATTCTCTTTACTTATTGGAAACATGCAGAAATATTTGGAATCTACATCTGTTAGGGTGGAAGAGATGAGAGTCAAGATGAGGAATGCAGAAGCAGCAGAACGATGGATGTCACGCCGTATGTTACCTGATTACTTGAAGAAAAGAATTAGAAGTTATGAACAATACAAATGGAAAGAAAATAGAGGTGTTGAAGAAGAGACTTTAATTCGCAACCTCCCTAAAGATCTCAGAAGAGACATAAAGCGTCATATTTGCCTGGATTTAGTTAAAAGAGTGCCAATGCTTGAGAAAATGGATGAGCAATTGTTGGATGCAATGTGTGATAGAATGAAACCAGTTCTGTATACAGAGAAGAGTTGCATTGTCCGTGAACAAGATCCGGTTGATGAAATGATTTTCATTAGGCGTGGAAAAATCGTTACCATGACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCATACTTTCTAAGGTCTGGTGATTTTTGTGGAGAAGAACTTTTAACATGGGCTTTGGATCCACACTCCTCAAATCTACCAACTTCATCTAGAACAGTACAAACTATATCAGAAGTTGAAGCATTTGCACTCATGGCTGATGATTTGAAGTTTGTTGTTTCCAAATTTAGACATTTTATGAATAGCAAACAACTTCAACACACTTTCAGGTTTTATTCGCCGCAATGGAGGACATGGGGTGCGCGTTTCATACAAGTAGCTTGGCGTCGATACAGGAAAAAGAAGATTGAGAGAACACTGCAAACATCTCTGGTAATCCTTGATGATGATATTGAAGAGAATCCTCAAGAACCTGCTTTTAAGAGACAAAGGAGTTCTCTTGTTTCACCTACTGCAGAAATATCCGAAGAAGTAAGGGACAATACTAGGAAACAAGGTTCATCTTCTGATATGGGTCAAAGCTCTAACCCTGCATTTGTATCTGCTACTGAACTCAAGACCTTTCAAGAAGAAATCCGAAAAGAGTTAGCTAGTCAGGCCAACAGTCAAGCTGAAATGATGAAACAATTGGATGCTATACAGGAACTTCTGATGGAATTAATCTCTAAACAACACTAG 2226 0.3854 MTLFIAGLRIGDQSHLSVSSVLKSIGRRFESGLEKMKKFRRLESGLEKMKKFRRSSSSFFEILVFEILDPQGPMLQKWNEIFLITCVMAVSVDPLFFYIPVIVGKNKCLDLNEPLQTTASVLRTFFDLFYILRIIFQFRTGFLAPSSRVFGRGELMNDPFAIMKRYSLSSHFIIDILSIIPLPQVIALAIIPHLKSSSPFLAKDFLKYTVLIQYVPRLLRIRPLFEEVTRTSGILADTPWARAVFNLLLYLLASHVVGANWYLLSVESQVRCWYREMDNDSLFHASYLGCGQQNERVFPLLNSTCIFVDPDEIKDTKTFNFGIFSDALQSLVVDSTTKFPYKFFYCFWWGLRNLSSLGQNLKTSTYLPEIAFAFFISIFGLVLFSLLIGNMQKYLESTSVRVEEMRVKMRNAEAAERWMSRRMLPDYLKKRIRSYEQYKWKENRGVEEETLIRNLPKDLRRDIKRHICLDLVKRVPMLEKMDEQLLDAMCDRMKPVLYTEKSCIVREQDPVDEMIFIRRGKIVTMTTNGGRTGFFNSYFLRSGDFCGEELLTWALDPHSSNLPTSSRTVQTISEVEAFALMADDLKFVVSKFRHFMNSKQLQHTFRFYSPQWRTWGARFIQVAWRRYRKKKIERTLQTSLVILDDDIEENPQEPAFKRQRSSLVSPTAEISEEVRDNTRKQGSSSDMGQSSNPAFVSATELKTFQEEIRKELASQANSQAEMMKQLDAIQELLMELISKQH* 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0078 741 SUPERFAMILY Voltage-gated potassium channels 69 396 - -
Tpr6g0078 741 SMART cnmp_10 477 607 IPR000595 -
Tpr6g0078 741 Coils Coil 395 415 - -
Tpr6g0078 741 MobiDBLite consensus disorder prediction 652 693 - -
Tpr6g0078 741 Gene3D Helix hairpin bin 402 468 - -
Tpr6g0078 741 ProSiteProfiles cAMP/cGMP binding motif profile. 477 562 IPR000595 -
Tpr6g0078 741 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 15 649 - -
Tpr6g0078 741 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 15 649 - -
Tpr6g0078 741 Pfam Ion transport protein 78 402 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tpr6g0078 741 Gene3D - 81 397 - -
Tpr6g0078 741 SUPERFAMILY cAMP-binding domain-like 412 596 IPR018490 -
Tpr6g0078 741 CDD CAP_ED 477 596 IPR000595 -
Tpr6g0078 741 Gene3D Jelly Rolls 475 594 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0078 Tpr-Chr6 648148 652670 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0078 37 627 Ion Channels AT5G53130 63.062 0.0 765
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0078 K05391 - gmx:100797784 905.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0078 6 648148 652670 Tpr6g0078 6 648148 652670 ECH