Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0076 ATGGAACAAGAAAAGAGCCAGACGATGTACAATCTCTTCGTGAAGCACTTAGACGGTAAAACCCTAACCCTATTATTCCCTTCTCCGATCCTTTACGCAAATTCGATCAAGGATCGTCTTTTCCAACTCACCGGAATCCCAATCCAACACCAACGCCTCGTCACCGGTTGCCGCCACCTCAACGACGACAAATCGGCAATATGTTGTTCGCCGGAAGGAGGGAACATGTTCCCATCTGTGCGTCTTCTTCTTCGTCTGAAAGGTGGGAAAGGAGGATTCGGATCGTTGCTTCGTGGAGCGGCGACGAAGGCGGGGCAGAAAAAGACGAACAATTTCGATGCGTGTAGGGATATGAGTGGAAGAAGGTTGAGACATGTGAATGCTGAGAAGAGATTGGAGGAATGGAGAGCTGGTGAAGAAGATAGAAAGCTTGAGAAGGTTGCTGAGGAGTTTCTGAAGAAACAGATGAAGAAGAATAAGGGTAAGGGTAAGAATGGTGATGGTGAAGCTCAGAAGTATGTAGCTAAATATAGGGAACAATCTGAACGTTGTGTTGCGGAGGTTGCTTTGTCTGTTCAGGATTCTCTCAAGCGGAAATCTTCGCCTACATCGGAAGCTTCTCTTCCTAGTGATCCCAAGAAATTGAAGATATGGATGGGGAAGAGGACATTGAATGAAAGTGATAGTGATGATTCTGATGAAGATGTTGATAATGATGAGGGGGAAACCGAGAAATCTGTTTTGTTAAATAGTCAGAATGAGTCTGGGTTAAATAAGGCGGAAGATAGTTCTGATTCTGTGAATGGTCTAAAGCGGGATGGAGAATCTTCTGGGGTCGGCTCATGTGAGAGTGGATCTGAAGAAGAGAAGGAAACCGTTGAAGAAGGCAAAGTTGAAACTGTTGGAGGATCCCAGAGTAGTGAAACTATTAAGGAAAATCTGAGTGTTGCTGCCGAACCCATGGTAAATGATGATGTGATGGAGGCTAATGCGGTGCCTTGTTCAGAGGCATTGGAGTCTGGAATTAGTGCTCAAGATAATGGCTGTCAGGATTACAAGGTTCATGGCACTGTAACTCAAGACTCAAATATTGTGAGCTCTGAAATTCTGCCAAATGACATGGAAGTTGATGGTTCTCTTGAGGATAAAACGGCTGTCATGGAAGTAAGCTTGCCAAACACTACTGTTCCTGCAAAGGAGGAGCCTCTGAATTTTGATGATTTTAATTCAGCTGCAGAACTTGAGGTTCTTGGCTTGGAAAATTTGAAGACTGAACTCCAATCACGTGGGTTAAAATGTGGAGGTACTTTGCAGGAGCGTGCTGCAAGGCTTTTTCTTTTAAAATCGACTCCCCTGGATAAACTTCCGAAGAAACTGCTAGCAAAGAAATGA 1392 0.4447 MEQEKSQTMYNLFVKHLDGKTLTLLFPSPILYANSIKDRLFQLTGIPIQHQRLVTGCRHLNDDKSAICCSPEGGNMFPSVRLLLRLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWRAGEEDRKLEKVAEEFLKKQMKKNKGKGKNGDGEAQKYVAKYREQSERCVAEVALSVQDSLKRKSSPTSEASLPSDPKKLKIWMGKRTLNESDSDDSDEDVDNDEGETEKSVLLNSQNESGLNKAEDSSDSVNGLKRDGESSGVGSCESGSEEEKETVEEGKVETVGGSQSSETIKENLSVAAEPMVNDDVMEANAVPCSEALESGISAQDNGCQDYKVHGTVTQDSNIVSSEILPNDMEVDGSLEDKTAVMEVSLPNTTVPAKEEPLNFDDFNSAAELEVLGLENLKTELQSRGLKCGGTLQERAARLFLLKSTPLDKLPKKLLAKK* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0076 463 Coils Coil 409 429 - -
Tpr6g0076 463 ProSiteProfiles Ubiquitin domain profile. 10 89 IPR000626 GO:0005515
Tpr6g0076 463 MobiDBLite consensus disorder prediction 193 311 - -
Tpr6g0076 463 MobiDBLite consensus disorder prediction 194 208 - -
Tpr6g0076 463 SUPERFAMILY Ubiquitin-like 6 70 IPR029071 -
Tpr6g0076 463 Pfam Replication stress response SDE2 C-terminal 395 462 - -
Tpr6g0076 463 Gene3D - 2 91 - -
Tpr6g0076 463 PANTHER SPLICING FACTOR SF3A-RELATED 9 462 - -
Tpr6g0076 463 PANTHER REPLICATION STRESS RESPONSE REGULATOR SDE2 9 462 - -
Tpr6g0076 463 Pfam Silencing defective 2 N-terminal ubiquitin domain 11 162 IPR024974 -
Tpr6g0076 463 MobiDBLite consensus disorder prediction 245 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0076 Tpr-Chr6 619958 622618 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0076 391 462 C2H2 Transcription Factor Family AT5G06160 45.833 3.10e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0076 K25059 - gmx:100781694 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0076 6 619958 622618 Tpr6g0076 6 619958 622618 ECH