Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0074 ATGGACATCTTGAAGTTCCTCTTTCACTTGTTCATATTATTTCCTGTCATATATACCTCAGAAGACTATTGTCGAAATTCTTGGTGCAGTGAGAATAACATCCTTATTCGTTTCCCTTTTCAATTAGAAGATGAAGGTGATCGATATCCTTATTGTGGCTATCCTGGTTTCAGCTTAACTTGTACTAATGATAGCAAAACAGTTCTAACACTTCCTTATTCGGGAGTTTTCTATGTTCGCAGAATTGATTATCTCGGACACCACATACAAGTCTATGATCCTCATCATTGCCTTCCAAATCGTCTTCTAAGCCTCAACCTTTCAGGTTCACCTTTTGATACTGAATTTCTTACTAATTACACCCTCTTGAGTTGCTCAACTCCTAACCTAGGATCGCAATTCACACCCGTTGATTGTCTTAGCAATTCTACACATTTTGTATCAGCTACTCCTTCATTGAGCTTCCCCAATTCATTGCCTCAGTCTTGCCATGTTATTAGAAATATCTCAGTTCCAGTTACAACATCATATCAGGAAATTTTCAGTGAAGATCTTCAACTAACATGGTCTTCACCTGATTGTAGATATTGTGAATTACTAGATAGCATGTGTGGATTTGAGAGCAGAAATAGTAATCATGTTCGTTGTTCCCCTAATCACCAAACAGAAGTCAGAACTTTTCCATTTTCAGACCGTTCGCGAGATGGTCATTCACACGGTAGTCTTTTGATTTCAAGAATCATCATATTATCGATTGGGGGAATAGCTATGTTGTGTGCAATTGGGATAGGATGCTTAACGCACTTCAATCGCAGAAGAAGGACAATATCAGATGAACCTGCCATTGACATTACCATTACAAGGATGAGGATGGGTTTAGATGAGTCAACAATTGAGTCTTTTGAGAAGATTGTATTAGGGGAGAGCCGAAGACTTCCGGGAGTAGGACACACTGATGGAACCGGATGTTGTTCAATATGCCTATCAGAGTACAACGGCAAGGACATAATCAGATGCATTCCTGAATGCAAACATTGTTTCCATGCTCACTGCATCGATGCATGGCTTCGCATGAATGCTACATGCCCAATTTGCCGCAACTCTCCCTCCGCTAGTCATTCTCATTTTCACATATCATCATCATGA 1146 0.3979 MDILKFLFHLFILFPVIYTSEDYCRNSWCSENNILIRFPFQLEDEGDRYPYCGYPGFSLTCTNDSKTVLTLPYSGVFYVRRIDYLGHHIQVYDPHHCLPNRLLSLNLSGSPFDTEFLTNYTLLSCSTPNLGSQFTPVDCLSNSTHFVSATPSLSFPNSLPQSCHVIRNISVPVTTSYQEIFSEDLQLTWSSPDCRYCELLDSMCGFESRNSNHVRCSPNHQTEVRTFPFSDRSRDGHSHGSLLISRIIILSIGGIAMLCAIGIGCLTHFNRRRRTISDEPAIDITITRMRMGLDESTIESFEKIVLGESRRLPGVGHTDGTGCCSICLSEYNGKDIIRCIPECKHCFHAHCIDAWLRMNATCPICRNSPSASHSHFHISSS* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0074 381 Pfam Wall-associated receptor kinase C-terminal 172 217 IPR032872 -
Tpr6g0074 381 ProSiteProfiles Zinc finger RING-type profile. 324 366 IPR001841 -
Tpr6g0074 381 SMART ring_2 324 365 IPR001841 -
Tpr6g0074 381 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 376 - -
Tpr6g0074 381 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 3 376 - -
Tpr6g0074 381 SUPERFAMILY RING/U-box 323 369 - -
Tpr6g0074 381 Pfam Wall-associated receptor kinase galacturonan-binding 24 93 IPR025287 GO:0030247
Tpr6g0074 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 371 IPR013083 -
Tpr6g0074 381 Pfam Ring finger domain 324 366 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0074 Tpr-Chr6 611282 614226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0074 24 373 C3H Transcription Factor Family AT2G46495 38.781 3.52e-74 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0074 - - gmx:100799895 400.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0074 6 611282 614226 Tpr6g0074 6 611282 614226 ECH
Tpr6g0074 6 611282 614226 Tpr5g1441 5 27541926 27544331 PCT