Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0073 ATGATAATTAAGCCTACTTTGAAATCTGGAACGCAGAATCTGAAGCGATGTAAGCTGGAACAAGACAAGGATTACGCACCTCCAGTAATTCAGAAGAAGCAGAGACCGAATAACGGTTTTTATTCCATCGGCGAAAGCGAAGGCTTGAAAATCATTTCTGTCTGTGGATCCGGCGAAGGATTCAATTGCGGCAGTGGTGGTGGTGAAATTCACTCCAATTCAGCTCCCGTAGAGCTGAAAGCTGCCACCGGAGAAACACCTCTGTTGTCATCGCGAACATCGAGAGGTCGTGTTAAAAAAGTTCCATCTAAGTTCAATGATTCAGTTCTTCTCGATCCGAGAAAGACTAATGGACGAATCGATAGATCTGAGTTTGGAATTGAAGATGATAATAGTGAGATTGGAATTGGATTTGTGAATAAGGGAAAGGAAAACAAATTCGATTCAAAAACTGAAAGTGATAATGGTTTTGATGAATTTGACTATGATAAGCATGCTAAATCGTTTAAGAGCGTTAAAACGACGGTTAAAGGGAGTCGTTTGTCGTTGGTTAAAACCGAGAGTGGAAATGGTTTTGATGAAAAGGGTAAAGAGGGGAAAGAGATTTATAAGCTAGAGGATTTTGGTTTGGGTGATATAGTTTGGGCAAAATGTGGCAAGTGTTCTCCGGCATGGCCTGCTGTGGTGATTAATCCCATTTTGCAAGCTCCTGAGTCTGTTCTCAGGCGTTGTGTTCCCGGTGCAATTTGTGTTATGTTTTTTGGTTATTCGAAAAACGGAAAGCATAGGGACTATGCGTGGGCGAAGCAGGGGATGGTATTCCCCTTCTTGGAATTCATGGATAGATTCCAGGGGCAGACGCGATTGAACAAGAGCACACAGAGTGACTTTCACGTGGCAATGGAAGAGGCAGTGTTGGCGGAAGATGGCATCCTGGACCCACACTTTGTAGCTGAGCAAGCTGCGGAGGTCACGGGTTCCTGTGCTGATGCGACATATCACTGCCAAGACCAGGATACAATATCCTGTTATGGCTGTGGTTTGACATTGCCATGCAAAACCATGAAGAAGGTTAAGGATTCAAGCTGTGCTCCTCAGCATTATTGTAAATCTTGTGCAAAGTTACTTAAATCGAAACAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGATGCTGGTGATTGGGTATGCTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGACAAAATTTCTAGCAAACTTTTGAAGGATCTGGAAAATATAGATTACTATTGCCCAGATTGCAAGGGAAAGTCGGATTGTAAATTATCAGCATCACAAACATACAAATCAATAAAATCAGTAGGGAACAACCAAAAACCTGTGTTACCTGAAAAGCTAGCGGTGGTGTGCAATGACATGAAAGGAATTTACTTTCCAAAGCTTCATTCAGTTATATGCAAGTGTGGCTCGTGCGGGTCAAGGAAGCAGGCACTGGCTGAATGGGAAAGACATGCAGGTTGCAGAGCCAAAAAATGGAAACTTAGTGTGAAAGTAGAAGGCACAATGCAATCACTAATAAAATGGATCACAGAACATAATTCCCAGGCTGGAATTTCCAAGCAGTTAGATCAAAAACAGGTGCTTTCCTTTTTGCAAGAGAAGTATGAGCCAGTTTATGCGAAATGGACAACAGAGAGATGTGCGATTTGCAGATGGGTTGAAGATTGGGAAGATAACAAAATTATTATCTGCAACAGATGCCAAGTTGCCGTTCACCAAGAGTGCTATGGGGCAAAGAATGTTCAAGACTTTACTTCCTGGGTCTGTAGAGTGTGTGAAACTCCTGAGGTAGAAAGAGAGTGTTGCCTCTGTCCAGTAAAAGGTGGTGCACTGAAGCCAACTAATGTTGAGTTGCTGTGGGTTCATGTAACATGCGCTTGGTTTCGGCCTGAAGTTGTTTTCCGAAACCACGAGGCAATGGAACCTGCCTCTGGAATCCTTAAGATTCCTGCTAATTCCTTTTTGAAGACTTGTGTGATCTGTAAGCAAAGCCATGGTTCCTGTACAAGTTGTTGCAAGTGTGCTACATACTTTCATGTGATGTGTGCATCAAGAATGGGATATGGCATGGAATTGCGTTCTACAGTGAAGAAGGGGACTCGAATAACAAAGACGCTAATATATTGTGCAGTTCACAGGGTCCCAAATCCAGATTCAGTAGTGGTTCTGCATACACCCCTGGGGTTATTCTCTCCAGGAACTTCACTCCAAAATCCCAAGGGACGCTTTAGAGGATCAAAGATTATTTCATCAAATAATATAGAACTCCTTGAACCTTCAACCTCTGAACATTATGAGGTTGAGCCACTATCTGCAGCCAGGTGTCGTGTTTACAAAAGGTCTCCCAATAAGAAGGATGATGCACCAATTATTCACTTGCTTGGGGGGCCAAACCTTCATTCTTTAAGTGCAATAACTCAATTGAACCGCAATACGGATGCTGGGGTATTTTCTTCATTTAAGGAGCGCCTTCGCCATTTACAGAAAACGGAAAATTTTAGAGTTTGCCTTGGAAAATCAGCTATTCAAGGATGGGGCCTCTTTGCTCGTAGAGATTTGCAAGAAGGGGACATGGTTGTTGAGTACCGTGGTGAGCAGTTAAGGCGCAGTGTTGCTGATCTGAGGGAAGCAAAGTACCGGTTAGAAGGCAAAGATTGTTATCTGTTCAAGATAAGTGAGGAAGTGGTAATTGATGCAACAGATAAGGGAAACATTGCACGTCTAATAAATCATTCTTGCATGCCAAACTGCTTTGCAAGGATTATGTGTTCTGGTGATCAGGAGAGTCGGATTGTTCTTATTGCCAAGACCAATATTTCTGCTGGTGAAGAACTAACATATGACTACTTGTTCGACCTAGATGAGCGGGCTGAACTCAAGGTTCCCTGCCACTGCAAAGCCCCCAATTGTAGGAAATTTATGAACTAA 2982 0.4282 MIIKPTLKSGTQNLKRCKLEQDKDYAPPVIQKKQRPNNGFYSIGESEGLKIISVCGSGEGFNCGSGGGEIHSNSAPVELKAATGETPLLSSRTSRGRVKKVPSKFNDSVLLDPRKTNGRIDRSEFGIEDDNSEIGIGFVNKGKENKFDSKTESDNGFDEFDYDKHAKSFKSVKTTVKGSRLSLVKTESGNGFDEKGKEGKEIYKLEDFGLGDIVWAKCGKCSPAWPAVVINPILQAPESVLRRCVPGAICVMFFGYSKNGKHRDYAWAKQGMVFPFLEFMDRFQGQTRLNKSTQSDFHVAMEEAVLAEDGILDPHFVAEQAAEVTGSCADATYHCQDQDTISCYGCGLTLPCKTMKKVKDSSCAPQHYCKSCAKLLKSKQYCGICKKIWHHSDAGDWVCCDGCNVWVHAECDKISSKLLKDLENIDYYCPDCKGKSDCKLSASQTYKSIKSVGNNQKPVLPEKLAVVCNDMKGIYFPKLHSVICKCGSCGSRKQALAEWERHAGCRAKKWKLSVKVEGTMQSLIKWITEHNSQAGISKQLDQKQVLSFLQEKYEPVYAKWTTERCAICRWVEDWEDNKIIICNRCQVAVHQECYGAKNVQDFTSWVCRVCETPEVERECCLCPVKGGALKPTNVELLWVHVTCAWFRPEVVFRNHEAMEPASGILKIPANSFLKTCVICKQSHGSCTSCCKCATYFHVMCASRMGYGMELRSTVKKGTRITKTLIYCAVHRVPNPDSVVVLHTPLGLFSPGTSLQNPKGRFRGSKIISSNNIELLEPSTSEHYEVEPLSAARCRVYKRSPNKKDDAPIIHLLGGPNLHSLSAITQLNRNTDAGVFSSFKERLRHLQKTENFRVCLGKSAIQGWGLFARRDLQEGDMVVEYRGEQLRRSVADLREAKYRLEGKDCYLFKISEEVVIDATDKGNIARLINHSCMPNCFARIMCSGDQESRIVLIAKTNISAGEELTYDYLFDLDERAELKVPCHCKAPNCRKFMN* 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0073 993 Gene3D SET domain 780 993 IPR046341 -
Tpr6g0073 993 CDD PHD_ATX3_4_5_like 564 610 IPR042011 -
Tpr6g0073 993 PANTHER PHD FINGER PROTEINS 1 993 - -
Tpr6g0073 993 SMART PostSET_3 977 993 IPR003616 -
Tpr6g0073 993 Pfam PHD-finger 381 434 IPR019787 -
Tpr6g0073 993 SUPERFAMILY SET domain 843 990 IPR046341 -
Tpr6g0073 993 ProSiteProfiles PWWP domain profile. 210 279 IPR000313 -
Tpr6g0073 993 ProSiteProfiles Zinc finger PHD-type profile. 562 613 IPR019787 -
Tpr6g0073 993 Pfam PHD-zinc-finger like domain 618 730 - -
Tpr6g0073 993 Gene3D - 204 309 - -
Tpr6g0073 993 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 374 439 IPR013083 -
Tpr6g0073 993 ProSiteProfiles Post-SET domain profile. 977 993 IPR003616 -
Tpr6g0073 993 ProSiteProfiles SET domain profile. 851 968 IPR001214 GO:0005515
Tpr6g0073 993 SMART PWWP_4 208 277 IPR000313 -
Tpr6g0073 993 SUPERFAMILY FYVE/PHD zinc finger 563 627 IPR011011 -
Tpr6g0073 993 SUPERFAMILY Tudor/PWWP/MBT 206 309 - -
Tpr6g0073 993 ProSiteProfiles Zinc finger PHD-type profile. 379 435 IPR019787 -
Tpr6g0073 993 Pfam PWWP domain 211 305 IPR000313 -
Tpr6g0073 993 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 993 IPR025780 -
Tpr6g0073 993 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 1 993 - -
Tpr6g0073 993 Pfam PHD-finger 577 611 - -
Tpr6g0073 993 Pfam SET domain 862 967 IPR001214 GO:0005515
Tpr6g0073 993 CDD SET_SETD1-like 840 989 - -
Tpr6g0073 993 SUPERFAMILY FYVE/PHD zinc finger 379 439 IPR011011 -
Tpr6g0073 993 SMART PHD_3 675 731 IPR001965 -
Tpr6g0073 993 SMART PHD_3 564 611 IPR001965 -
Tpr6g0073 993 SMART PHD_3 381 433 IPR001965 -
Tpr6g0073 993 ProSitePatterns Zinc finger PHD-type signature. 565 610 IPR019786 -
Tpr6g0073 993 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 556 614 IPR013083 -
Tpr6g0073 993 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 615 732 IPR013083 -
Tpr6g0073 993 SMART set_7 851 974 IPR001214 GO:0005515
Tpr6g0073 993 ProSiteProfiles Extended PHD (ePHD) domain profile. 616 731 IPR034732 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0073 Tpr-Chr6 602472 610588 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0073 565 717 C2H2 Transcription Factor Family AT3G14740 35.185 3.73e-20 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr6g0073 zf-HC5HC2H_2 1.1e-26 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0073 - - lja:Lj1g3v5034780.1 1390.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0073 6 602472 610588 Tpr6g0073 6 602472 610588 ECH