Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0061 ATGGACTCTCCATCAGGTGGCCGTCCTAAATTGCCGGCGAAGCGAGGTGACGTCGCCGGAGAGAACCACATGCCGCAGCTTAAGAATCAAATCAAGAACAAAATTGAAGAGGCTGAACAACACATGTCCAACAATAAGAGGAAGAAGATCGTCGTCACCGATCTAAGTAACGGATCAGTCTCGGAGCTGAATCGAAACTCGACGAGAAAGAAGAAGAAACCGATTGATCAAGAGAAGGAAGGTGATTGTGGCAAGGGATTAATTGATGTGTATAAGGTCAACAAAGCCAAAAATGGAGTTAAAGATACCAAAAAACAGGCTTATCAGGGTTTATCCAGCAAAACCAAGGAGAGTGGAAGTTTGATGTGTCATCAGTGCCAACGGAATGATAAGAGTGGCGTCATCTTTTGCTCGAGTTGCAACAGAAAGCGCTATTGTTACGAGTGCATTGAGAACTGGTACCCGGGAAAAACCCGAGAGGACTTCAAGAATGCATGTCCGTTTTGTTGGGGCAACTGCAACTGCAAAGCTTGCTTGCGGGAGTTTCCTGTGCTAATGGTAGATGTCATCCTTTTATTTTCAAAATTCAAAAATAAACTATATGTGATTTATATTTATATGCTTACTGTTGAGTTTATTCAACTCTTGTCCTTATTTTCACAGGAAAGGGAAGTAAATGCCAGTGTCAAATTACCGCGGCTGTTGTACTTGCTATCTAAAGCTCTTCCAGTTCTGAGGCATATCCACAGGGAGCAGAGCTTCGAACTAGAGACTGAAATCAAAATAAGAGGTAAGCAACTGCAAGAAGTTGACATAACAAGAACAAAGCTAGATGAAAGTGAGCGCTTGTACTGTGACAATTGCAGTACATCCATATATGGATTTTACCGTAGCTGCCCCAACACAAGTTGCTCTTATGATCTCTGTCTTGTTTGCTGTCAAGAGCTCAGAGAGGGTTACCAACCTGGCGGCATGGAGGCTGGAACATCTCATGAAAAATTTGAAGAGATTTTTCACAATCACAATTCAACAAAAAATCAGAGTAAAACACGTCGTAAAAGATATGACTGGGAAAGCGAACTTGCACCTACTAGTGTTCCTTCTCAGGCTGACATGTTCTCTCCCTTCCCAGAATGGAAAGCTAATTGTGATGGTAACATTCCATGTCCTCCAAAGCAGCGTGGAGGTTGTGGTACTGCATTGCTAGAACTGAGACGCATTTACAAAGCTAATTGGGTAGCAAAACTGCTAAATAATGCTGAGGATCTCACTAGAAATTACACGCCTCTGGATGTGGATATTACTGAAAAGTGTTCTTTATGTCAGCTAAATTTGTTTGAAGGAAAAATCAACCCTGACGTCAGGAGGGCATCATTCCGGAATGACAGTAAAGATAACTTCTTATATAGTCCAAATGCCCTTGACATTTCTGATGATGAGATCGAGCACTTCCAGAGGCACTGGATGAGGGGTGAACCTGTGATTGTGAGAAATGTTCTGGCCAAAACATCAGGTCTTAGTTGGGAACCAATGGTTATGTGGAGGGCCCTCAGAGAAACAGGTTCCAAAGCGAAGTTCAAAGAGGAAACACAAAGTGTTAAGGCTGTAGATTGCTTGGATTGGTGTGGGGTTGAAATAAATATACACCAATTTTTCAAAGGCTACGTAGAAGGCCGAATGCATATAAATAAGTGGCCAGAAATGTTGAAATTGAAAGATTGGCCTTCATCGACCTCATTTGAAGAGCGCTTGCCTAGGCATGGTGCTGAATTCCTTGCTGCACTTCCCTATATGGACTACACTGATCCAAAATCAGGTCTTTTAAATTTTGCCAGTAAACTTCCTGCTGGCTCGTTGAAACCAGATTTGGGACCCAAAACATATATTGCTTATGGATTTTCTGAAGAGCTTGGCCGAGGAGATTCTGTGACAAAACTGCACTGCGATGTGTCTGATGCGGTGAATGTGTTGACACACACAAACAAGGTGAATATAGCTCCCTGGCAGAGAGAAAACATAAATAAATTGAAGAAGGAATATGGTAAAGAAGACTATTTGGAACTCTATCGTGAAGCTTTAGATAATGTTGATGTAAAATCCAAATCTAAAGCATTGGACCATGATCAAAAGGCAGAGAATGGAGTTAACCGGATTTTACCAAGTAGCCAAGTAGAAAAGTGTATTTCATCAATATCCGAAGACTTGAGTGGCAAGGTAGAAACACAGAACACAGAACAATGTGATGATAACGGAAAGGGCTCTTGCACCTATAGAAATGTTGCTGTAAGGAACTCCTCTGAGGATGATAGTGTTAGCATAACATCATCCGCTGAAGTTTCGGATTATTCTAGGACTTCTGACCTGGAGCAGCTTCAATCTGCAACCAGCTTAGCATCAAGTAATGCAAACATAAAGAAAGACAGAGTGAAGATTGATTTTTCAGATGGTAATGTGTCTGGTGATCCCAAGATTGAATCAAAACAAGGCATGGGGAGAGATTCTTTGGACATTGATAATGGAGCTGCGGCTGTCCTTGGTGGTGCTGTTTGGGACATCTTCCGCCGGCAAGATGTCCCAAAAATAATTGAGTACTTAAGAAAGCACAAGAAGGAATTTCGCCACATCAACAACAAACCTGTTGATTCAGTTATACATCCCATTCATGATCAGACTATATTCTTAAATGAGAGACATAAGAAACAGCTAAAAAGAGAATTTAAAGTTGAACCATGGACTTTTGAGCAACACCTTGGTGAGGCTGTTTTCATTCCAGCAGGATGTCCTCATCAAGTGAGAAACAGACAGTCTTGTATGAAGGTTGCACTTGACTTTGTTTCTCCTGAAAATGTTGGAGAATGTTTACGACTGACTGAAGAGTTTCGTTTACTCCCGAAGAACCACAGGGCCAAGGAGGACAAATTGGAGGTTAAAAAGATGACCCTTTATGCTGTGAGTAATGCTGTTAGACAAGTTAAAGAACTGGTTGATAGCCAATGA 2997 0.4161 MDSPSGGRPKLPAKRGDVAGENHMPQLKNQIKNKIEEAEQHMSNNKRKKIVVTDLSNGSVSELNRNSTRKKKKPIDQEKEGDCGKGLIDVYKVNKAKNGVKDTKKQAYQGLSSKTKESGSLMCHQCQRNDKSGVIFCSSCNRKRYCYECIENWYPGKTREDFKNACPFCWGNCNCKACLREFPVLMVDVILLFSKFKNKLYVIYIYMLTVEFIQLLSLFSQEREVNASVKLPRLLYLLSKALPVLRHIHREQSFELETEIKIRGKQLQEVDITRTKLDESERLYCDNCSTSIYGFYRSCPNTSCSYDLCLVCCQELREGYQPGGMEAGTSHEKFEEIFHNHNSTKNQSKTRRKRYDWESELAPTSVPSQADMFSPFPEWKANCDGNIPCPPKQRGGCGTALLELRRIYKANWVAKLLNNAEDLTRNYTPLDVDITEKCSLCQLNLFEGKINPDVRRASFRNDSKDNFLYSPNALDISDDEIEHFQRHWMRGEPVIVRNVLAKTSGLSWEPMVMWRALRETGSKAKFKEETQSVKAVDCLDWCGVEINIHQFFKGYVEGRMHINKWPEMLKLKDWPSSTSFEERLPRHGAEFLAALPYMDYTDPKSGLLNFASKLPAGSLKPDLGPKTYIAYGFSEELGRGDSVTKLHCDVSDAVNVLTHTNKVNIAPWQRENINKLKKEYGKEDYLELYREALDNVDVKSKSKALDHDQKAENGVNRILPSSQVEKCISSISEDLSGKVETQNTEQCDDNGKGSCTYRNVAVRNSSEDDSVSITSSAEVSDYSRTSDLEQLQSATSLASSNANIKKDRVKIDFSDGNVSGDPKIESKQGMGRDSLDIDNGAAAVLGGAVWDIFRRQDVPKIIEYLRKHKKEFRHINNKPVDSVIHPIHDQTIFLNERHKKQLKREFKVEPWTFEQHLGEAVFIPAGCPHQVRNRQSCMKVALDFVSPENVGECLRLTEEFRLLPKNHRAKEDKLEVKKMTLYAVSNAVRQVKELVDSQ* 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0061 998 SMART cupin_9 584 961 IPR003347 -
Tpr6g0061 998 ProSiteProfiles Ig-like domain profile. 625 774 IPR007110 -
Tpr6g0061 998 MobiDBLite consensus disorder prediction 38 78 - -
Tpr6g0061 998 MobiDBLite consensus disorder prediction 49 64 - -
Tpr6g0061 998 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN 1 184 - -
Tpr6g0061 998 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN 221 997 - -
Tpr6g0061 998 SUPERFAMILY Clavaminate synthase-like 481 980 - -
Tpr6g0061 998 Pfam JmjC domain, hydroxylase 847 944 IPR003347 -
Tpr6g0061 998 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 120 181 IPR018866 -
Tpr6g0061 998 MobiDBLite consensus disorder prediction 1 26 - -
Tpr6g0061 998 Gene3D Cupin 471 769 - -
Tpr6g0061 998 Gene3D Cupin 770 970 - -
Tpr6g0061 998 ProSiteProfiles Zinc finger RING-type profile. 123 169 IPR001841 -
Tpr6g0061 998 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 221 997 IPR045109 GO:0032454|GO:0033169
Tpr6g0061 998 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 1 184 IPR045109 GO:0032454|GO:0033169
Tpr6g0061 998 Coils Coil 24 48 - -
Tpr6g0061 998 Coils Coil 988 998 - -
Tpr6g0061 998 ProSiteProfiles JmjC domain profile. 603 961 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0061 Tpr-Chr6 536611 546227 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tpr6g0061 JmjC 3.3e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0061 K15601 - vvi:100258626 1051.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0061 6 536611 546227 Tpr6g0061 6 536611 546227 ECH