Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0060 ATGGAAGCCGAAACTCGCCGGAAAGTTGAAGACATGGTGTTGGATATACTTCAAAAATCCGACATTCAAGAAACCACTGAGTTCACTATCCGAGTTGCCGCCTCTGAGCGACTCGGTATCGACCTCTCCGGTCCAGATACCAAACGCTTTGTCAGAACCATTATCGAGACTTATCTTCTCTCCATCGCCAACGCCCAGAAATCACCGCCACAACTCTCCACGGAGGTGCCGGTGACACCCAACGAACCACCACAAGTGTCCAATGAACCGGTGAATGTAACTACACCCAAGGAGCCACCACAAGAGTTCAATAAAGTGGTGGGAGTGAAACGCAAAAACGATGACTCCGAAAAAGTCATTTGCCAGTTATCAACCAGGAGGAATGTGGCGGTTCGAGATTTCAAAGGGATGACATTGGTGTCAATTAGGGAGTTCTATAATAAAGATGGAAAACAGCTTCCCACGGCTAAAGGGATAAGTTTATCTTCTGAACAATGGTCAACCTTCAAGAATTGTGTTCCCGCTATAGAGGAAGCTATCACAAAGTTGGAAGGAAGGATAAGATCAGGGATTAATGGCAACAAAAATGGAGAAGTTGCAAGTTCAGTTATTGATGTTCCTGTTGAGCCTGTCGCTATTGAGCCTGTCACTATTGAGCCTGTCCCTATTGAGATCGTCCGTTTTGATGGAAAGAATTTTCAAGTTTGGGCTGAACAAATGGAATTATTCTTCAAACAGTTAAAAATCAATTATGTGCTTACTGAACCATGCCCAAATGCTACATTAGGGGAAAAGAATGCAAGTGCTGGGGAAACCAAAGCTGCTAGAAAGAGATGGGTAAATGATGATTTAACGTGTCGTCGTAACATCTTGAGCCATTTATCTGATAATCTATTCAACAAGTATGCAAATAGAAAAATGAGTGCTAAGGATTTATGGGAAGACTTAAAATTTGTTTATCTGTATGAAGAATATGGCACCAAGATATCTCAGGTGAAAAAGTATATTGAATTTCAAATGGTTGATCAAAAAGCAGTTCTTGACCAAATTCAAGAACTTAATTGCATTGCAGACTCTATTGCAGCTTTTGGAATGCCTATTGAGGAGAACTTCCATGTTAGTGTCATTGTTTCAAAGCTTCCACTATCCTGGAAAGACTTGTCCATCAAGTTAATGCGTGAGGAGCATCTACCTTTTTGGAAGTTAATGGAACTCATAACAAAAGAGGAAGAATCTCGCAATGGAGTGAAACAAATGGGTGAGCCTCTTTCTGATAGGGCAAAATTTTACCGTGCCAATGAAGGGGGGTCGAGCGGGGCTGACATTAAGCCGCCACCAGGTTTTCAAAGGAAGTATGAACCTAATAGCAAGAACGTATCATGTTATATTTGTGGCCAGAAGGGACATTTTTCTAAAAATTGTTGGAGATGGCTGTAA 1437 0.4168 MEAETRRKVEDMVLDILQKSDIQETTEFTIRVAASERLGIDLSGPDTKRFVRTIIETYLLSIANAQKSPPQLSTEVPVTPNEPPQVSNEPVNVTTPKEPPQEFNKVVGVKRKNDDSEKVICQLSTRRNVAVRDFKGMTLVSIREFYNKDGKQLPTAKGISLSSEQWSTFKNCVPAIEEAITKLEGRIRSGINGNKNGEVASSVIDVPVEPVAIEPVTIEPVPIEIVRFDGKNFQVWAEQMELFFKQLKINYVLTEPCPNATLGEKNASAGETKAARKRWVNDDLTCRRNILSHLSDNLFNKYANRKMSAKDLWEDLKFVYLYEEYGTKISQVKKYIEFQMVDQKAVLDQIQELNCIADSIAAFGMPIEENFHVSVIVSKLPLSWKDLSIKLMREEHLPFWKLMELITKEEESRNGVKQMGEPLSDRAKFYRANEGGSSGADIKPPPGFQRKYEPNSKNVSCYICGQKGHFSKNCWRWL* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0060 478 PANTHER PBF68 PROTEIN 1 473 - -
Tpr6g0060 478 Gene3D Transcriptional Coactivator Pc4; Chain A 110 188 IPR009044 GO:0003677|GO:0006355
Tpr6g0060 478 ProSiteProfiles Zinc finger CCHC-type profile. 461 474 IPR001878 GO:0003676|GO:0008270
Tpr6g0060 478 Pfam gag-polypeptide of LTR copia-type 279 414 - -
Tpr6g0060 478 SUPERFAMILY ssDNA-binding transcriptional regulator domain 120 182 IPR009044 GO:0003677|GO:0006355
Tpr6g0060 478 PANTHER PBF68 PROTEIN 1 473 - -
Tpr6g0060 478 MobiDBLite consensus disorder prediction 69 96 - -
Tpr6g0060 478 Pfam Transcriptional Coactivator p15 (PC4) 121 171 IPR003173 GO:0003677|GO:0006355
Tpr6g0060 478 Pfam Zinc knuckle 460 474 IPR001878 GO:0003676|GO:0008270
Tpr6g0060 478 Pfam DEK C terminal domain 5 59 IPR014876 -
Tpr6g0060 478 SUPERFAMILY Retrovirus zinc finger-like domains 447 474 IPR036875 GO:0003676|GO:0008270
Tpr6g0060 478 SMART c2hcfinal6 460 476 IPR001878 GO:0003676|GO:0008270
Tpr6g0060 478 Gene3D - 445 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0060 Tpr-Chr6 530542 534125 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Tpr6g0060 Retrotran_gag_2 3e-14 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0060 - - cam:101512708 588.186