Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0056 ATGGGATCAACAAAGCGCATGTTATGGGATGAACAAGAAAAATCCATGGTTGGAGCTGTTCTTGGTGGTCGAGCTTTGGATTTTTTGATAACAAATTGTTTATCAAATGAGAGTGTGTTAATTGGTGTTGGTGCTACTGATGATTCTCTTCAAAACAAGCTCTCTGATCTTGTTGAAAATTCATCCAATTTCAACTGGAACTATGCTATTTTCTGGCAACTTTCTCAGTCAAAATCCGGTGATTATGTTCTTGGTTGGGGAGATGGGTGTTGCAGAGAACCAAGTGAAGAAGAAGAACAAGAAAGTGGTGGTGGAGTTAAAGGAATTCTCAGTCTTGGCATGGAGAAAAATGAAGAAGAACAAGAAGATGGGGTGAAGCAGAATATGAGAAAGAGGGTTTTGCAGAAGCTACACACAGCTTTTGGTGGTTCAGATGAAGACAATTACGCTTTTGGCCTTGACCGTGTAACCGACACAGAGATGTTCTTTTTAGCTTCTATGTACTTTTCTTTTCCAAAAGGGTATGGTGGACCCGGTAAGTGTTTTGCTTCTGCTAAACATTTATGGTTCAAATCTGTTTCTGATTACTGCGTTCGTTCTTTCTTGGCTAAATCTGCTGGAATTCAAACTGTTGTTTTAGTACCTACTGATTTTGGTGTTCTTGAATTGGGTTCTGTTAGAATTTTACCTGAAAACTTTGAATTGTTAAACACTGTTAATTCTTTGTTTTCAATTTCAACTTCAACTTCCACCACACAATCATCATCATTGTATCCTAGAGTTATCAATGAAGGAAGAGATGAAAGTGGTATTTCAAATTCTGTTCAAATTCCAAAGGTTGTTTTGAGTTTGAACAATAATGGTCGTACACATTTTAGGGAGAAACTTGCTATTAGGAAAATGGATCATAGTAGCAGCATTAACTTTCCTAGTGTTAGAAATGGTGTTTGTGGTTCTTCTAGTTGGGGAGTGAACCAAGGTCAAGGTGAAATTTTTGCTCCTAATGGTGTCAGAAAGGATTTTAGGCTCAATAACAATAATAGCAACTATCAACCACAAAGGCAGGTTCAAATGCAAATGGAAATTGATTTTACTGGAGCGAATTTGAGGGCTAATTCTGTGAGACCGGTTATTGGTGAACCGGAACTTGCTGCTGCTGATGTTGAGGCTGATCAACCTAGTGATGGAAGGAGGCCGAGGAAGCGCGGAAGGAAGCCTGCTAATGGAAGGGACGAACCGCTCAATCATGTGGAGGCGGAGAGACAAAGGCGTGAGAAGCTTAATCAGCGTTTTTACGCTTTAAGAGCTGTTGTACCTAACATCTCCAAGATGGACAAGGCATCCTTACTTGGTGATGCCATTGCTTACATCAATGAGCTTCAAGCGAAACTCAATGTCATGGAGTCTGAGAGAGAGACATTTGGAAGCAGCACTTCGAAGGATGGATCGGCCAACTCGAGATCAGAAAATCGTCATCAGAACATTAGAGTTCCTCCTCCTGATGTCGATATTGAAGCTTCTAAGGATGAGGTAACTGTGAAGGTGAGTTGTTCTCTTGATACTCATCCTGTTTCGAAATTAATGGAAACATTCAAAGAGGCACAAATCAGTGTTGTGGAGTCGAAACTCGCTGCTGCAAATGATACTATCTACCATACTTTTGTAATTAAATCACAAGGATCTGAAGAGCTTACTAAGGACAAGTTGATTGCAGCATTTTCCCGAGAATCCAACGCTTTACAGATATAA 1749 0.4002 MGSTKRMLWDEQEKSMVGAVLGGRALDFLITNCLSNESVLIGVGATDDSLQNKLSDLVENSSNFNWNYAIFWQLSQSKSGDYVLGWGDGCCREPSEEEEQESGGGVKGILSLGMEKNEEEQEDGVKQNMRKRVLQKLHTAFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPKGYGGPGKCFASAKHLWFKSVSDYCVRSFLAKSAGIQTVVLVPTDFGVLELGSVRILPENFELLNTVNSLFSISTSTSTTQSSSLYPRVINEGRDESGISNSVQIPKVVLSLNNNGRTHFREKLAIRKMDHSSSINFPSVRNGVCGSSSWGVNQGQGEIFAPNGVRKDFRLNNNNSNYQPQRQVQMQMEIDFTGANLRANSVRPVIGEPELAAADVEADQPSDGRRPRKRGRKPANGRDEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLNVMESERETFGSSTSKDGSANSRSENRHQNIRVPPPDVDIEASKDEVTVKVSCSLDTHPVSKLMETFKEAQISVVESKLAAANDTIYHTFVIKSQGSEELTKDKLIAAFSRESNALQI* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0056 582 CDD bHLH_AtAIB_like 408 472 - -
Tpr6g0056 582 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 411 460 IPR011598 GO:0046983
Tpr6g0056 582 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 414 474 IPR036638 GO:0046983
Tpr6g0056 582 Coils Coil 578 582 - -
Tpr6g0056 582 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 7 578 - -
Tpr6g0056 582 MobiDBLite consensus disorder prediction 383 419 - -
Tpr6g0056 582 MobiDBLite consensus disorder prediction 471 498 - -
Tpr6g0056 582 MobiDBLite consensus disorder prediction 471 493 - -
Tpr6g0056 582 Gene3D - 405 475 IPR036638 GO:0046983
Tpr6g0056 582 PANTHER MYC 7 578 IPR045084 GO:0003700|GO:0006355
Tpr6g0056 582 SMART finulus 417 466 IPR011598 GO:0046983
Tpr6g0056 582 Pfam Helix-loop-helix DNA-binding domain 415 461 IPR011598 GO:0046983
Tpr6g0056 582 MobiDBLite consensus disorder prediction 405 419 - -
Tpr6g0056 582 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 50 243 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0056 Tpr-Chr6 494516 497044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0056 6 581 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 48.387 1.75e-176 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr6g0056 bHLH-MYC_N 2.5e-51 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0056 - - cam:101513355 771.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0056 6 494516 497044 Tpr6g0056 6 494516 497044 ECH
Tpr6g0056 6 494516 497044 Tpr5g1462 5 27869641 27872483 PCT