Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0049 ATGGGAAGAGCTCCTTGTTGTTCAAAAGTTGGGTTGCATAGAGGTCCATGGACTTCTCGTGAAGATGCATTGCTCACCAAATATATTCAAGCTCATGGTGAAGGCCAATGGAGATCACTTCCAAAAAGAGCTGGGCTTCTTAGATGCGGAAAAAGTTGCAGACTTCGATGGATGAACTATCTTAGACCGGATATAAAGAGAGGAAACATAACTCCAGATGAAGATGATCTCATTATAAGAATGCATTCACTTCTTGGAAATAGATGGTCTCTTATCGCCGGAAGGTTACCTGGGCGAACAGATAATGAGATAAAGAATTACTGGAACACACATCTCGGCAAAAAGCTCAAAAAACAAGAACCAGTAGAGAAGAAGAAGAATAAAAAGATGAAGAAGAATGACAAGAACAAAGTCATAACCAAAGTACCAGAAGATTCAGATAAGAAGACCTTAGTTTATATACCAAAGGCTATAAGGATCAAGAAGAATTTATCATCTATAATACCAAGAACTGATAATACCATAAACTTGGATTCCAACTCAGTAACAACAAGCCAAGAGGAAGAGCAAAAAGCAGAAACAAATGAGGGAGACAATGATATATTTGGATTGTTCTTTGGTGAACAGTACCATGAAGACTTGGTCAACATTAACAGTGATGACATGGAATGCCAATCTGGTTTTCTTGAGAAGATGTATGAAGAGTACTTGCAGCTATTGAAGAATGAAGAAAATCATGAAAATTTGTTAGACTCTTTTGCTGAGTCCTTATTGGCGTGA 780 0.3769 MGRAPCCSKVGLHRGPWTSREDALLTKYIQAHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITPDEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLGKKLKKQEPVEKKKNKKMKKNDKNKVITKVPEDSDKKTLVYIPKAIRIKKNLSSIIPRTDNTINLDSNSVTTSQEEEQKAETNEGDNDIFGLFFGEQYHEDLVNINSDDMECQSGFLEKMYEEYLQLLKNEENHENLLDSFAESLLA* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0049 259 Gene3D - 14 66 - -
Tpr6g0049 259 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tpr6g0049 259 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tpr6g0049 259 CDD SANT 16 61 IPR001005 -
Tpr6g0049 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tpr6g0049 259 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tpr6g0049 259 SMART sant 13 63 IPR001005 -
Tpr6g0049 259 SMART sant 66 114 IPR001005 -
Tpr6g0049 259 Gene3D - 71 142 - -
Tpr6g0049 259 PANTHER MYB TRANSCRIPTION FACTOR 123 247 - -
Tpr6g0049 259 PANTHER MYB TRANSCRIPTION FACTOR 1 120 - -
Tpr6g0049 259 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 120 - -
Tpr6g0049 259 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 123 247 - -
Tpr6g0049 259 CDD SANT 71 112 IPR001005 -
Tpr6g0049 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tpr6g0049 259 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tpr6g0049 259 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tpr6g0049 259 Coils Coil 229 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0049 Tpr-Chr6 457556 458974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0049 1 116 MYB Transcription Factor Family AT5G49330 75.862 2.71e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr6g0049 Myb_DNA-binding 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0049 K09422 - gmx:778044 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0049 6 457556 458974 Tpr6g0049 6 457556 458974 ECH
Tpr6g0049 6 457556 458974 Tpr5g1478 5 28132106 28134233 PCT