Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0045 ATGGCTTCTCTGGAAGCTATTTCTCAAATTATAGACACCGTTTCCGAGTTTGTATTTGCTTCAGACAATGTCCTTGTCAAGAAGGGTAGTTTTAAGGAACTTGGTGATTACTTGCAAAGAATTGCACCTATTTTAAAACAATTGAGGAAAGAAAAGGTCAGTGATTCCGAGACATTCAACAACGCCATCGAGATTCTGAATCGTGAAATTAAAGATGCAAAGAAATTGGTTCAAGAATGTAGCAAGAAGAGCAAGGTGTATCTCCTGGTGAACAGCAGAACTGTTGCTAAGCGCTTAAAACACAACACTAGCGAGATCAGCAGGGCAATTGGTCTTCTTCCTCTGGCTACATCAGGCCTTTCTGCTGGAACGATTGAAGAAATTGAAAGGTTACGTGACAATATGCAAGCAGCTGAGTTTAAGGCAGCCGTATCAGAAGAAGAGATATTAGATAAAATCGAGTTAGGGATACAGGAAAAGAATTTTGACCGCTCCTATGCAAATGATTTGCTGCTTCTCATTGCAGATGCTCTTGGGATTACAAAAGAGCGGTCGACATTAAAGAAAGAGCTTGAAGAGTTTAAAAGTGAAATTGAAAATGAGAAAGACCGGGCTGAGGCCATTCAAATGGATCAAATCATTGCTTTGTTGGAAAGGTCTGATGCAGCCTCGTCAACCAGGGAAAAGGAACTCAAATACTTTGCAAAACGAGATTCTCTGGGTACTCAACCCTTGGAGCCTTTACAGTCCTTTTTTTGTCCTATTACTCGGGATGTTATGGATGACCCTGTGGAAACTTCATCTGGGCAAACATTTGAGAGAAGTGCAATTGAAAAGTGGTTTGCGGAAGGAAACAAAACATGTCCTCTATCTTGCATTACTTTAGACACGTCGATTTTGAGACCTAACAAAACCTTGAAACAATCAATAGAAGAATGGAAAGATAGGAATACAGTGATTACAATTGCTTCAATGAAAGAAAAAATCCAATCTGGGGATGAAGTTGGAGTATTGCATTGCCTGCAAACTCTTCAAGGTTTGTGTGAACAAAAGGACCAGCACAGAGAATGGGTGGTACTGGAGAATTATATACCAGTTCTTATCCAATTTCTTTCCGAAAAAAACCGTGATATAAGGAATCACGTCCTTGTCATCCTTTGCATGCTGGTGAAGGATAATGAAGATGCCAAGGAAAGAATTGCAAAAGTAGACAATGCAATCGAGTCTATTGTCCATTCTCTTGGCCGTCGTTTGGGGGAAAGGAAGTTGGCTGTGGCATTACTACTGGAACTATCCAAATGTGATTTGTTAAAAGAATACATTGGAAAAGTTCAAGGTTGCATACTACTATTGGTGACTATGTCTAGCAGTGAGGACAGTCAAGCTGCCAGAGATGCAACAGAGTTGCTGGAGAAGCTTTCATGCTATGATCAGAATGTTATACAGATGGCAAAGGCAAATCATTTCAAGCATTTATTGCAGCGTCTCTCCACAGGACCAGATGATGTGAAGATGATTATGGTCAAAATGTTAGCAGAAATGGAGTCAACAGACCACAATAAGGAGATCTTGTTTGACAGCGGTATTCTGGCTCCTCTTCTTCACTTGGTCTCGCATAATGATGTTCAGATGAAATTGGTTGCCCTTAAAGCTCTACAGAATCTATCTAGTTTACAGAAAAATGGACTAGAAATGATTCGACAAGGTGCAGCACGCCTATTATTTGGCATTCTTTTCCAGCACAGCCTTCCTTCCTCAAGTTTGTCAGAACATGTAGCTCCCATAATTATGCAACTTGCTGCATCTACCATCTCTCAGGATACACAGACACCAGTTTCATTGTTAGAATCCGATGAAGATGTTTTTAACCTTTTCTCTCTAATTAGCTACACAGTGCCTGATGTGCGACAATATATTATCCAGACTTTTTATGCCCTCTGTCAGTCGCCGTCAGCTTCAGATATCAAAAACAAGCTAAGAAAGTGCCCATCGGTTCTTGTATTGGTCAAGTTGTTTGAGAATGAAAGCCTAAATCTTCGAGCAAGTGCTGTGAAGCTGTTTTCTTGCCTGGTTGAAAGCAGTGATGAGGCCACCATACTGCAGCATGTGAATCAGAAGTGTGTTGAGACTTTACTCCAGATCCCGAAATCTTCATCTGATGAAGAAGAAATTGTTTCTGCTATGGGAATAATACGTTATCTTCCAAAAATTGAACAGATCACTCAGTGGCTTTTGGATGCCGGGGCGTTGCCAATCATTTGTAATTATATCCAAGAAGGGAAGGACAAAGATCTCCGAAATAGTAAGCTGGTAGAGAATTCTGTTGGTGCCTTATGTCGTTTTACAGCTCCAACAAAATTGGAATGGCAAAAGCGTGCTGCCGAAACTGGGATTATAACTGCTTTAGTACAATTGCTTGAAAGTGGAACTGCTCCAGCAAAACAGCTAGCAGCACTGTCCCTAACTCAATTTTCTAAAAGCTCACAAGAACTAAGCAGTCCAATGCCAAAGCGCAAGGGATTTTGGTGCTTCTCAGCCCAAACAGAAGCCGGATGCTTAGTTCATGGTGGTGTATGCACCGCAGAATCATCATTTTGCCTTTTGGAGGCTGATGCAGTAGGACCACTAGCAAAAACTCTCGGGGAATCTGATTTTGGGGTGTGTGAGACTTCCTTAGATGCTCTTCTAACTTTAATTGACGGGGAAAAGCTGCAGAGTGGTAGTAAAGTGCTTGCAGATAAAAATGTCATACCACTAATAATAAGATTTCTCGGCTCCTCTTCCCCCGGATTGCAGGAAAAGTCACTTAATGCTTTGGAAAGGATTTTCCGGTTATTGGAGTTCAAACAGAAATATGGAGCTTCAGCTCAAATGCCTCTGGTTGATTTAACTCAGCGGGGTAATGGCAGCGTTAAATCCATGGCAGCTCGAATATTGGCACATTTGAATGTGCTTCATGATCAATCTTCATATTTTTAA 2979 0.4109 MASLEAISQIIDTVSEFVFASDNVLVKKGSFKELGDYLQRIAPILKQLRKEKVSDSETFNNAIEILNREIKDAKKLVQECSKKSKVYLLVNSRTVAKRLKHNTSEISRAIGLLPLATSGLSAGTIEEIERLRDNMQAAEFKAAVSEEEILDKIELGIQEKNFDRSYANDLLLLIADALGITKERSTLKKELEEFKSEIENEKDRAEAIQMDQIIALLERSDAASSTREKELKYFAKRDSLGTQPLEPLQSFFCPITRDVMDDPVETSSGQTFERSAIEKWFAEGNKTCPLSCITLDTSILRPNKTLKQSIEEWKDRNTVITIASMKEKIQSGDEVGVLHCLQTLQGLCEQKDQHREWVVLENYIPVLIQFLSEKNRDIRNHVLVILCMLVKDNEDAKERIAKVDNAIESIVHSLGRRLGERKLAVALLLELSKCDLLKEYIGKVQGCILLLVTMSSSEDSQAARDATELLEKLSCYDQNVIQMAKANHFKHLLQRLSTGPDDVKMIMVKMLAEMESTDHNKEILFDSGILAPLLHLVSHNDVQMKLVALKALQNLSSLQKNGLEMIRQGAARLLFGILFQHSLPSSSLSEHVAPIIMQLAASTISQDTQTPVSLLESDEDVFNLFSLISYTVPDVRQYIIQTFYALCQSPSASDIKNKLRKCPSVLVLVKLFENESLNLRASAVKLFSCLVESSDEATILQHVNQKCVETLLQIPKSSSDEEEIVSAMGIIRYLPKIEQITQWLLDAGALPIICNYIQEGKDKDLRNSKLVENSVGALCRFTAPTKLEWQKRAAETGIITALVQLLESGTAPAKQLAALSLTQFSKSSQELSSPMPKRKGFWCFSAQTEAGCLVHGGVCTAESSFCLLEADAVGPLAKTLGESDFGVCETSLDALLTLIDGEKLQSGSKVLADKNVIPLIIRFLGSSSPGLQEKSLNALERIFRLLEFKQKYGASAQMPLVDLTQRGNGSVKSMAARILAHLNVLHDQSSYF* 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0045 992 CDD RING-Ubox_PUB 251 291 IPR045210 -
Tpr6g0045 992 Pfam Armadillo/beta-catenin-like repeat 517 557 IPR000225 GO:0005515
Tpr6g0045 992 Pfam U-box domain 251 317 IPR003613 GO:0004842|GO:0016567
Tpr6g0045 992 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 992 - -
Tpr6g0045 992 SMART arm_5 737 783 IPR000225 GO:0005515
Tpr6g0045 992 SMART arm_5 393 433 IPR000225 GO:0005515
Tpr6g0045 992 SMART arm_5 351 391 IPR000225 GO:0005515
Tpr6g0045 992 SMART arm_5 860 900 IPR000225 GO:0005515
Tpr6g0045 992 SMART arm_5 904 944 IPR000225 GO:0005515
Tpr6g0045 992 SMART arm_5 517 557 IPR000225 GO:0005515
Tpr6g0045 992 Coils Coil 56 83 - -
Tpr6g0045 992 SUPERFAMILY ARM repeat 324 982 IPR016024 -
Tpr6g0045 992 Gene3D - 1 118 IPR036537 GO:0007166
Tpr6g0045 992 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 992 - -
Tpr6g0045 992 ProSiteProfiles U-box domain profile. 246 320 IPR003613 GO:0004842|GO:0016567
Tpr6g0045 992 SMART Ubox_2 250 313 IPR003613 GO:0004842|GO:0016567
Tpr6g0045 992 Coils Coil 128 148 - -
Tpr6g0045 992 Coils Coil 184 211 - -
Tpr6g0045 992 SUPERFAMILY RING/U-box 238 319 - -
Tpr6g0045 992 Gene3D - 618 982 IPR011989 -
Tpr6g0045 992 Gene3D - 325 617 IPR011989 -
Tpr6g0045 992 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 324 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0045 Tpr-Chr6 426997 432597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0045 249 992 U-box Gene Family AT1G76390 27.700 1.51e-56 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0045 - - gmx:100799969 1355.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0045 6 426997 432597 Tpr6g0045 6 426997 432597 ECH
Tpr5g1489 5 28254675 28259996 Tpr6g0045 6 426997 432597 ECH