Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0038 ATGGGAAGTGGTGAGAGAAGTGTTAGAGGGTTTGTTCTGCATGGGAAGAAGCAAGAATTCAAAGATGTACCAAAAGGGTGTCTTGCAATCAAGGTTGGTCAAGGAGAAGATCAACAGAGATTCGTTGTGCCAGTTATATACTTCAATCATCCACTTTTCATGCAACTTCTCAAAGAAGCAGAGGAAGAATATGGTTTTGATCAGAAAGGAACCATAAAAATTCCATGTCATGTTGAAGAGTTTAGAAACATTAGAGGTTTGATTGATAGAGAAAAGTCTCTTCATAACAACCATCATGTTAGATGCTTTGGCTTTTGA 318 0.3774 MGSGERSVRGFVLHGKKQEFKDVPKGCLAIKVGQGEDQQRFVVPVIYFNHPLFMQLLKEAEEEYGFDQKGTIKIPCHVEEFRNIRGLIDREKSLHNNHHVRCFGF* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0038 105 Pfam Auxin responsive protein 18 84 IPR003676 GO:0009733
Tpr6g0038 105 PANTHER SMALL AUXIN-UP RNA-RELATED 15 99 - -
Tpr6g0038 105 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 15 99 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0038 Tpr-Chr6 399743 400499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0038 22 82 Calmodulin-binding Proteins AT5G20810 54.098 2.24e-17 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0038 K14488 - pvy:116108881 185.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0038 6 399743 400499 Tpr6g0038 6 399743 400499 ECH
Tpr5g1500 5 28560679 28561486 Tpr6g0038 6 399743 400499 ECH