Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0033 ATGTCAGAGGGTGCAGAGATTGACGAGCGTGTTGACCTCGATGAGGAAAATTATATGGAAGAGATGGACGATGATGTTGAGGAGCAGATAGATGACGATGGAGTGGATGGGGGTGAAGATGAAAACGCTGAAGGTAGTGCCGAAGAAAATGAATATGAGGAGTCGGCGGCAGAGGCTGGTGGTAAAGACCAATCTACCGAAGGAGAAAAAAGTGACCGTGCCACTGAAGAAGATGACCAAAAGCCATCGCTCATTGATGACGAGGAGAAAGAGAAGCACGATGAACTTCTTTCGCTTCCTCCTCATGGTGCTGAAGTCTTTATTGGTGGACTTCCTCGGGATACACGTGACGATGATATAAGGGAGTTGTGCGAGCCAATGGGTGATATTGTTGAGATTAAATTAATCAAAGACAGGGAAACTGGAGAAAGCAAGGGTTATGCTTTCGTGGCTTTTAAAACCAAGGATGTGGCACAGAAGGCCATCGATGATATACATAACAAGGAATTTAAGGGTAAAACTTTGAGGTGTTCGCTGTCTGAAACCAAACACAGGTTGTTCATCGGCAACATTCCAAAAACATGGACAGAGGATGAGTTTAGGAAAGCCGTTGACGGTGTTGGTCCCGGAGTTGAAAGCATTGACCTCATAAAGGACCCTCAAAATCAAAGCAGAAATCGTGGGTTTGCTTTTGTTTTGTATTACAACAATGCATGTGCTGATTATTCACGGCAAAAGATGGCAAGTTCGAATTTCAAGCTAGATGGAAATACACCAACTGTTACTTGGGCAGATCCAAAGACCTCACCTGACAATTCAGCTTCTTCACAGGTTAAAGCTCTATATGTGAAAAACATACCTGAGAATGTTACTACTGATCAACTAAAGGAGCTATTTCGTCGTCATGGGGAAGTAACGAAAGTGGTCATGCCACCTGGCAAAGCTGGAGGGAAACGTGATTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGAGACAGAGAAATATGAAATTGATGGCCAAGCTCTTGAAGTTGTTATTGCCAAGCCTCAAGCTGAAAAAAAACCTGATGGAGGCTATCCATACAATACTGGACTCCATCCTAACCATCTTCCACATCCTGGCTATGGTAACTTTTCTGGAAATCTTTATGGCTCAGTTGGGGCTGGATATGGTGTTGCTGCTGCTGGTTATCAACAGCCAATGATATACGGCAGGGGTCCAATGCCAGCCGGAATGCAGATGGTTCCAATGGTTTTACCAGATGGTCGAATTGGCTATGTCCTTCAACAGCCTGGTGTACAGGTGCCAGCTCCCCGACCACGCAGAAATGACCGGGGCAATGGTCCAGGCGGTCAGGCAGGGCGTGGAGGAGGTAGTGGTAATGATGATGGAAATCGTAATAGAAGGTATCGGCCCTATTAG 1443 0.4525 MSEGAEIDERVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSAEENEYEESAAEAGGKDQSTEGEKSDRATEEDDQKPSLIDDEEKEKHDELLSLPPHGAEVFIGGLPRDTRDDDIRELCEPMGDIVEIKLIKDRETGESKGYAFVAFKTKDVAQKAIDDIHNKEFKGKTLRCSLSETKHRLFIGNIPKTWTEDEFRKAVDGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADYSRQKMASSNFKLDGNTPTVTWADPKTSPDNSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIAKPQAEKKPDGGYPYNTGLHPNHLPHPGYGNFSGNLYGSVGAGYGVAAAGYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQVPAPRPRRNDRGNGPGGQAGRGGGSGNDDGNRNRRYRPY* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0033 480 SUPERFAMILY RNA-binding domain, RBD 272 371 IPR035979 GO:0003676
Tpr6g0033 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 279 356 IPR000504 GO:0003723
Tpr6g0033 480 Gene3D - 266 388 IPR012677 -
Tpr6g0033 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 182 IPR000504 GO:0003723
Tpr6g0033 480 CDD RRM_SF 106 178 - -
Tpr6g0033 480 MobiDBLite consensus disorder prediction 439 480 - -
Tpr6g0033 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 266 IPR000504 GO:0003723
Tpr6g0033 480 PANTHER GEO13361P1-RELATED 2 478 - -
Tpr6g0033 480 Gene3D - 15 184 IPR012677 -
Tpr6g0033 480 SUPERFAMILY RNA-binding domain, RBD 95 183 IPR035979 GO:0003676
Tpr6g0033 480 SUPERFAMILY RNA-binding domain, RBD 185 272 IPR035979 GO:0003676
Tpr6g0033 480 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 478 - -
Tpr6g0033 480 SMART rrm1_1 105 178 IPR000504 GO:0003723
Tpr6g0033 480 SMART rrm1_1 280 352 IPR000504 GO:0003723
Tpr6g0033 480 SMART rrm1_1 185 262 IPR000504 GO:0003723
Tpr6g0033 480 MobiDBLite consensus disorder prediction 8 54 - -
Tpr6g0033 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 281 349 IPR000504 GO:0003723
Tpr6g0033 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 176 IPR000504 GO:0003723
Tpr6g0033 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 251 IPR000504 GO:0003723
Tpr6g0033 480 SMART rrm2_1 105 178 IPR003954 GO:0003676
Tpr6g0033 480 Gene3D - 185 265 IPR012677 -
Tpr6g0033 480 CDD RRM3_hnRNPR_like 278 356 - -
Tpr6g0033 480 MobiDBLite consensus disorder prediction 1 103 - -
Tpr6g0033 480 MobiDBLite consensus disorder prediction 55 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0033 Tpr-Chr6 357859 364078 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0033 106 456 Eukaryotic Initiation Factors Gene Family AT2G23350 25.648 8.73e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0033 K13161 - gmx:100800974 706.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0033 6 357859 364078 Tpr6g0033 6 357859 364078 ECH