Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0030 ATGTCGATTGGAGAGACTGCTTGCTCATACGCCCTTCTCATCCTTGAAGATGATAACATTCCCGCAACTGCTGACAACATCACAAGTTTGTTGAAAAGTGCAAAGGTAGAAGTTGAATCCTTTTGGCCCGCCTTATTTGCTAAACTTGCTGAGAAGAAGAATATTAGGGATTTGATTGCCAATGCTGCTGGCGGTGGTGGTGGTGCCGTAGCTGTTGCTGCAGCTCCAGCTGCTGCAGCAGCAGCTGCTCCTGCAGCTGCTGAGAAGAAGGAAGAGCCAAAAGAAGAAGAAGAGAGTGACGAGGAAATGGGTTTTGGCTTGTTTGATGAATAG 333 0.4745 MSIGETACSYALLILEDDNIPATADNITSLLKSAKVEVESFWPALFAKLAEKKNIRDLIANAAGGGGGAVAVAAAPAAAAAAAPAAAEKKEEPKEEEESDEEMGFGLFDE* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0030 110 Gene3D - 1 62 IPR038716 -
Tpr6g0030 110 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 99 - -
Tpr6g0030 110 Hamap 50S ribosomal protein L12 [rpl12]. 6 109 IPR027534 GO:0003735|GO:0005840|GO:0006414
Tpr6g0030 110 MobiDBLite consensus disorder prediction 94 110 - -
Tpr6g0030 110 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN 1 99 - -
Tpr6g0030 110 Pfam 60s Acidic ribosomal protein 23 108 - -
Tpr6g0030 110 CDD Ribosomal_P1 5 61 - -
Tpr6g0030 110 MobiDBLite consensus disorder prediction 83 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0030 Tpr-Chr6 334967 336120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0030 1 109 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 51.351 6.86e-33 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0030 K02942 - gmx:100791962 103.219