Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0027 ATGGCTGCCAACGTTACTACTACAGCTACTCTGTCTCTCTCCTTCGCTGCGACAACCTCTTCTTCTCTCCTTGCTAGTAGTAGTAATAGTAATAGCTCCTCAAAACGATTATTTTCATTTTCTGCGCTTCCTTATCCTTCTTTCTCGCTTCGCACCTCAAATCCTAGGGCTGTTCTCAATGGACAAACGCCAAACGGCGTCGTTTCTGACCCGGAACAACAACAACAACCACTCAAGCTGCGAAATACAACCGAACTCTACGTCTGTAACCTTCCTAGAACCTATGACACCCAACAGCTACTCGATATCTTTACTCCTCATGGAACCGTTTTATCTGCACAGGTTTGCCGGAATGCCGAGACAGGTGAGAGTAAGGGGAGTGCTTATGTCAAGATGGGATCTTATAATGCTGCTAAAAATGCAGCTGCTAACTTGGATGGATTGGATGTTGAAGGGCGCGAAATGCGGGTTAAATTTTCACTTCAGATGAATATTAAGAAGAATTTTGTAGAGACATTGAACGCAACGCCTTTGAGAACTATATTTTATGAAGGACCTCATAAGGCGTATGTTGGGAATCTTGCTAAGTCTGCTACACCTGAAGACCTGAGATATCTCTTTGGTAAATTTGGAAATGTGGCTAGTGTGAGGGTGTTGCAAGATATGAAACAGGGGAAAAGTCGTACCTATGCCTTTGTCTCTTATCTTTCTCAGAGTGAACGTGACGCCGCTATGTCTCTCAATGGAACTGAATTTTGTGGTCGAATTCTAGTGGTTAGAGAGGGTGTGGAGCAGACCAGAACTTAA 807 0.4387 MAANVTTTATLSLSFAATTSSSLLASSSNSNSSSKRLFSFSALPYPSFSLRTSNPRAVLNGQTPNGVVSDPEQQQQPLKLRNTTELYVCNLPRTYDTQQLLDIFTPHGTVLSAQVCRNAETGESKGSAYVKMGSYNAAKNAAANLDGLDVEGREMRVKFSLQMNIKKNFVETLNATPLRTIFYEGPHKAYVGNLAKSATPEDLRYLFGKFGNVASVRVLQDMKQGKSRTYAFVSYLSQSERDAAMSLNGTEFCGRILVVREGVEQTRT* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0027 268 PANTHER OS02G0815200 PROTEIN 7 266 - -
Tpr6g0027 268 SUPERFAMILY RNA-binding domain, RBD 184 263 IPR035979 GO:0003676
Tpr6g0027 268 CDD RRM_SF 190 260 - -
Tpr6g0027 268 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 7 266 - -
Tpr6g0027 268 SUPERFAMILY RNA-binding domain, RBD 54 166 IPR035979 GO:0003676
Tpr6g0027 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 162 IPR000504 GO:0003723
Tpr6g0027 268 Gene3D - 183 268 IPR012677 -
Tpr6g0027 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 264 IPR000504 GO:0003723
Tpr6g0027 268 SMART rrm1_1 85 158 IPR000504 GO:0003723
Tpr6g0027 268 SMART rrm1_1 188 260 IPR000504 GO:0003723
Tpr6g0027 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 256 IPR000504 GO:0003723
Tpr6g0027 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 156 IPR000504 GO:0003723
Tpr6g0027 268 Gene3D - 49 168 IPR012677 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0027 86 252 Eukaryotic Initiation Factors Gene Family AT2G23350 28.824 3.07e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0027 - - adu:107486682 252.292