Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0025 ATGGGTGAATCAACGATGCAGATCAACAATCATCATGACTCCTCAGTCCACAAGTTTCTTCCTCCCACCATGCTTAGGGTCTTGCTCGTCGAAGCTGATGATTCTACCCGCCACATTATTTCTGCACTTCTTCGCAAATGCGGTTATAAAGTTTCCGCAGTTCGTGATGGCTTAAAGGCATGGGAGACATTGAAGAACAAATCATCTGAAATAGATCTCGTATTAACAGAAGTGGAGTTGCCATCAATATCTGGTTTTTCACTACTTACCTCAATCATGGAGCTTGACATTTGCAAAAACATTCCTGTCATAATGATGTCTTCTAACGATTCAGTTAGCACGGTGTTCAAATGCATGCTAAACGGGGCCGCCGATTTTCTCATTAAACCTGTTCGGAGGAACGAGCTTAGCAACTTGTGGCAACATGTGTGGAGAAAACATACCAATAAACTTGATGTTGCTGCAGAAAACAATGCTGCAAGCAATAATTCTAGTGGTTCTGTGGCTTCCACACAAAAGAATGTCGAATGCAGCGAAAAAACTAGTGAGGCTCAAGATATGTCCCAGCTGAAGAGTTCTTCATGTTTGAGCAATACCAGCCAGGCAAAACACGAAAATTCTACCAGATATGAAAGGGAGTTTGCTGAGTATAACGAAGAAACTGGAGAGAAATCAACTATAATAGCATCTAAAGCTGCTGGGTATGACAAAATTTCAACAGGTTTAAGGCTTGGTCAAAGCTATGATTGTACAGAAACAGAAAACCAAGATGAAGTGTTAAAAACAGAGTTTAGCAAAGCCAATCCTCATACTAATACAAAGATTCATCAATGTAATGATGGAATAGAAGAACATTCTGCTGGAGCTATTGACTTGATGGCTACTTTTCAGAATATTCCAAAGAGCAGTTATGCCGATTGTAGTTTCAATGCTGGTGGTAACACAGCCAATTTTGATACACAATTGGAACTTTCTATACAAAGAGATTTTCCTGGAAGCTCACCTAAACTTACCAATGAAGAAGGGCAAATATTGAATCATTCAAATGCTTCTGCGTTTTCTTTGTATGGCAGCAGTACATTGTTGAAGCCTTTCTTTCCAACAAAGAATTTGCATGAATCACACAAATTATCGGAAAATACAAATATTGGTCATCAGTATGATGTTAAAAAACTAAAGCAGGAAAATATCACCTATCTGGCAATTGGTCAGCCTGAACAAGTCGATGCAAAATCTCTTAACAGTCAACTTGAATTATTTCCTGCCACCGGGTCCACTTCTGATAATAAGTCTATGGAACATGATAATGTTTTTCAACCTATGTTTGATGCACAGTCAGGTATGCATCCCACATGGACACCAAAATCAATGTTCCATAAAGAGAGTTCTCCTTTTCCCGCAAGTATTTCCTCCCACTCCAACCCTAAAAGTCAAAACTCAGAACCTCGCCACTGGTCAGATGATGCCACCTATACTTGTGATCAAAACATAAATGATCAAAGCAATATAGATTGTGACGACTCTCCATCTAACGGACAAAGTTGTGGTACTAGTTTTTACCATGATGTGGAAAATTGCAACACCAGTGGTGTATGTGAAGAAGGCATAGGCAGCGGAAGTGATGGAAATGCCCCTTCAGCTGTTGTAGGCAAGAACAACCTTGAAAGTTCTATGAATAATGATCAATATGACGGGCTTGGAGGCACAAATTCTCATCGCACCAGCCAAAGAGAAGCAGCTCTAATGAAGTTTCGACTGAAGCGAAAAGACAGATGCTATGATAAAAAGGTCCGATATGAAAGCCGGAAAAGACAAGCAGAGAATCGCCCCCGGGTGAAAGGGCAGTTTGTTCGCCAAGTACACGGTGAACTTCCAGTAGCTGATACTGGAAGTTACTGA 1899 0.4044 MGESTMQINNHHDSSVHKFLPPTMLRVLLVEADDSTRHIISALLRKCGYKVSAVRDGLKAWETLKNKSSEIDLVLTEVELPSISGFSLLTSIMELDICKNIPVIMMSSNDSVSTVFKCMLNGAADFLIKPVRRNELSNLWQHVWRKHTNKLDVAAENNAASNNSSGSVASTQKNVECSEKTSEAQDMSQLKSSSCLSNTSQAKHENSTRYEREFAEYNEETGEKSTIIASKAAGYDKISTGLRLGQSYDCTETENQDEVLKTEFSKANPHTNTKIHQCNDGIEEHSAGAIDLMATFQNIPKSSYADCSFNAGGNTANFDTQLELSIQRDFPGSSPKLTNEEGQILNHSNASAFSLYGSSTLLKPFFPTKNLHESHKLSENTNIGHQYDVKKLKQENITYLAIGQPEQVDAKSLNSQLELFPATGSTSDNKSMEHDNVFQPMFDAQSGMHPTWTPKSMFHKESSPFPASISSHSNPKSQNSEPRHWSDDATYTCDQNINDQSNIDCDDSPSNGQSCGTSFYHDVENCNTSGVCEEGIGSGSDGNAPSAVVGKNNLESSMNNDQYDGLGGTNSHRTSQREAALMKFRLKRKDRCYDKKVRYESRKRQAENRPRVKGQFVRQVHGELPVADTGSY* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0025 632 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR3 ISOFORM X1 17 610 - -
Tpr6g0025 632 MobiDBLite consensus disorder prediction 158 210 - -
Tpr6g0025 632 Coils Coil 589 609 - -
Tpr6g0025 632 Pfam Response regulator receiver domain 27 138 IPR001789 GO:0000160
Tpr6g0025 632 Pfam CCT motif 577 619 IPR010402 GO:0005515
Tpr6g0025 632 SMART REC_2 25 140 IPR001789 GO:0000160
Tpr6g0025 632 SUPERFAMILY CheY-like 23 154 IPR011006 -
Tpr6g0025 632 Gene3D - 25 271 - -
Tpr6g0025 632 ProSiteProfiles CCT domain profile. 577 619 IPR010402 GO:0005515
Tpr6g0025 632 MobiDBLite consensus disorder prediction 158 204 - -
Tpr6g0025 632 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 610 IPR045279 GO:0009736
Tpr6g0025 632 MobiDBLite consensus disorder prediction 462 485 - -
Tpr6g0025 632 CDD psREC_PRR 27 130 - -
Tpr6g0025 632 ProSiteProfiles Response regulatory domain profile. 26 144 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0025 Tpr-Chr6 301971 307049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0025 559 621 Response Regulator Gene Family AT5G24470 66.667 1.66e-18 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Tpr6g0025 Response_reg 1.7e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0025 K12130 - gmx:100809490 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0025 6 301971 307049 Tpr6g0025 6 301971 307049 ECH
Tpr5g1536 5 29299885 29305978 Tpr6g0025 6 301971 307049 ECH