Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0020 ATGGACGCTTACTCATCTGGAGAAGAAGTGTTTGTTAAGACAAGAAAACCGTATACAATCACAAAACAAAGAGAAAGATGGACAGAAGAGGAACATGATAGATTTTTAGAAGCCCTCAAGCTATATGGCCGAGCATGGCAGCGCATAGAAGAGCATATAGGAACCAAAACTGCTGTGCAAATAAGGAGCCATGCCCAAAAATTCTTTTCAAAGTTGGAGAAGGAAGCACTTGTAAAAGGTGCTGCATTAGGACAAGCTCTTGACATAGACATCCCCCCTCCACGGCCCAAAAGAAAACCAAGCAATCCTTATCCTCGCAAGACCAATGTTGGTACCCCAACATTACATAGTGGAGCAAAGTATGGAAAGCCACTTATTGCAGTTGCATCTTCGCATGGTAAACAGGCAATGGATTTTGAGAAAGAATCACCTCCAGAGCATAAAGATGAGGAAAGGCCAACAACTGGAAAAGAAAATAACAACGAAAATTGTTCAAAAGTATTTACAATCCTCAAGGAGGCACCCTGTTCGTCTGTCTCTTCAGCAATCCAGAGTTCAATCTCAAATTTAGTGCCACAAACAAACTCCTGCACCTTGAGGGAGTTTACACCTTCAGTGAAAGAGGTAATAACTCGAGATGAAACAAACAAATCTTTTCCTGCTACTGAGATTGAAAATCAGATGTTGGAGATAGATGATGGCAAACAAACACATAAGACTGATGGCACTTGTAAAACCTCTAAGTTGGATAATTCCTGTTCTCCTAAATCGGTTCAAGTTGAGAAAACAGATGGTCTTACTTCGGCATTAACAATAGATGAGATGCAAAGTAATCAGAATTACCCAAGACATGTCACTGTGCACGTTGTTGATGGGAACCTTGGAACTAGCACTCAAACTCCATCACAAGATATGTTGATTCAAGACTCCACATTTCAGCCAATAGGAGGGATTAATGGGCAACGTAATCTTTTCACAAATTCAGCTGCATCAAACACAAGTGAAAGTCAAAATAACATGGCACGATCCTCTATTCATCAATCATTTCCTCCTTGTCCTCCATTTGCACAACATAATCATGATGATTACCAATCCTTTCTCAACATGTCTTCTACATTTTCAAGTCTTCTTGTCTCTACCTTGCAGCAACACCCTGCAGCGCATGCTGCAGCAAGTTTTGCTGCTACATTTTGGCCCTATGCAAATATAGAAAGTTCAGCCGATTCTCCTGCTTGCTCTCAAGGAGCTTTTCCATCTAGACAAATTGGTTCACCTCCTGGTGTGGCAGCTATTGCAGCTGCTACGGTAGCTGCTGCAACTGCATGGTGGGCAGCTCATGGACTGCTTCCTTTGTGCGCTCCACTCCATACAGCTTTTGCCTGTCCTCCTGCATCAGCAACTGTAGTTCCATCAACGAATCTTAGTGAAGCACCACCGAAGACAAAACAAGGAGATATTACACTACAAAATCCTCCTCTGCAAGATCAGATATTTGATCCAGAAGACTCGGAAGCTTTGATAGCTCAGCATTCAGCTGCCAAGTCACCAGCTGTTTCTTTATCTGAATCTGAGGAGAGTGGAGACGCCAAATTAAATACTTCATCAAAGGCCACTATTAATCTTGACATAAACCGACCAATTTCTGAAAACCCCGATCCCAACAAAATGGAGGGCAGAAAACTGGTTGACAGGTCTTCTTGTGGTTCCAACACAACCTCTAGCTGTGAAGAGACTGATGTGCTAGAGAAGGATGATAAAGAAAAGGAAGATTCCAAAGCACCTGAGGCAGACCATTTAGCCACTGATCCTAGTAGTCGTCGATATAGAAGCATTAGCAACCTTATTGATTCTTGGAAGGAGGTGTCTGAAGAGGGACGACTTGCCTTTCGGGCTCTATTCTCCAGAGAGGTGTTGCCCCAAAGCTTTTCACCTCCTCATGATTTGATAGATAAGGATCTACAGACGGACAACATGAAGCATAACGAGCAAAATGTAGACGACAGAGATCAACTTGACAGCATGAAATGCAGTTCTAATTGTGACATGGTGCAGCAAAACCTACCATTTGTACAAAATAACAATGAGGAGGATGGCCTGCTAACCTTAGGTCTTGGACAAGGTAAGCTTAAGACTCGTCGAACAGGGTTTAAACCGTACAAAAGATGTTTAGTAGAGGCCAAGGAAAACAGGGTTGGAACGGCTTGTAATCAAGTTGAAGAGACGGGTCCCAAGAGGATACGCCTGGAAGGGGGGAGTTCTACTTGA 2265 0.4291 MDAYSSGEEVFVKTRKPYTITKQRERWTEEEHDRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKLEKEALVKGAALGQALDIDIPPPRPKRKPSNPYPRKTNVGTPTLHSGAKYGKPLIAVASSHGKQAMDFEKESPPEHKDEERPTTGKENNNENCSKVFTILKEAPCSSVSSAIQSSISNLVPQTNSCTLREFTPSVKEVITRDETNKSFPATEIENQMLEIDDGKQTHKTDGTCKTSKLDNSCSPKSVQVEKTDGLTSALTIDEMQSNQNYPRHVTVHVVDGNLGTSTQTPSQDMLIQDSTFQPIGGINGQRNLFTNSAASNTSESQNNMARSSIHQSFPPCPPFAQHNHDDYQSFLNMSSTFSSLLVSTLQQHPAAHAAASFAATFWPYANIESSADSPACSQGAFPSRQIGSPPGVAAIAAATVAAATAWWAAHGLLPLCAPLHTAFACPPASATVVPSTNLSEAPPKTKQGDITLQNPPLQDQIFDPEDSEALIAQHSAAKSPAVSLSESEESGDAKLNTSSKATINLDINRPISENPDPNKMEGRKLVDRSSCGSNTTSSCEETDVLEKDDKEKEDSKAPEADHLATDPSSRRYRSISNLIDSWKEVSEEGRLAFRALFSREVLPQSFSPPHDLIDKDLQTDNMKHNEQNVDDRDQLDSMKCSSNCDMVQQNLPFVQNNNEEDGLLTLGLGQGKLKTRRTGFKPYKRCLVEAKENRVGTACNQVEETGPKRIRLEGGSST* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0020 754 MobiDBLite consensus disorder prediction 514 547 - -
Tpr6g0020 754 Gene3D - 26 73 - -
Tpr6g0020 754 MobiDBLite consensus disorder prediction 577 604 - -
Tpr6g0020 754 PANTHER SWI/SNF COMPLEX-RELATED 2 736 - -
Tpr6g0020 754 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Tpr6g0020 754 MobiDBLite consensus disorder prediction 88 117 - -
Tpr6g0020 754 MobiDBLite consensus disorder prediction 509 604 - -
Tpr6g0020 754 MobiDBLite consensus disorder prediction 132 161 - -
Tpr6g0020 754 SMART sant 23 71 IPR001005 -
Tpr6g0020 754 ProSiteProfiles SANT domain profile. 22 73 IPR017884 -
Tpr6g0020 754 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Tpr6g0020 754 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Tpr6g0020 754 Pfam Myb-like DNA-binding domain 24 67 IPR001005 -
Tpr6g0020 754 MobiDBLite consensus disorder prediction 135 157 - -
Tpr6g0020 754 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Tpr6g0020 754 CDD SANT 26 69 IPR001005 -
Tpr6g0020 754 PANTHER PROTEIN LHY 2 736 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0020 Tpr-Chr6 263402 272511 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr6g0020 Myb_DNA-binding 2.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0020 K12133 - gmx:780540 989.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0020 6 263402 272511 Tpr6g0020 6 263402 272511 ECH