Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0017 ATGGAAGCAGAAGTGAAAGGGTATTGTTCTGATAGCAGGGAAGAAGTAGAGGAAGAGGAAGAAGGTGCAGCAGATGAAGAGATCATCCCAATCACAAGAGGAAGAGGAAGCCAAAACAGCAGCAGCAGCAGGTTACAGTTTGAGTTACAGACATCACAACAGCTGGAAGAAGAAGAAGAAGAAGAAGAAGATGGGAGGAAGCAGGTGGAGGAAGTAGATATGATGGAGTTGAGATTGGGAGGAGGAAAAGGGAGGAAGAACAAGGAGGAAGGAGGAAGTTCAAATTCAAAGAAGGTGGTAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCATTGCCACCGGTAGTAGTGGAGAAAGAGCACATGTTTGACAAAGTGGTGACACCTAGTGACGTAGGGAAGCTGAATCGACTTGTGATTCCAAAGCAGTATGCAGAGAAGTACTTCCCATTGGATTCATCTAATGACAAAGGGATTCTTCTAAACTTTGAAGATCGGAATGGGAAAATGTGGCGGTTCAGATATTCTTATTGGAACAGTAGCCAGAGCTATGTTATGACAAAAGGATGGAGTCGTTTCGTTAAGGATAAGAAGCTTGATGCCGGTGACATTGTTTCATTTCACCGTGGCCGTCATGAATCCTACAGACACAGGTTGTACATTGATTGGAGGCCAAGGTCTCACTCTCAACATCCTTACCACCACCACCACCACCTCATCCCACCACAATATCCTCCTCCTCCTCCTAATTTCTATCATCACTACTCATCATCATCACCACTATACACCTCACAGTATTACCCCGCCACCACTGCAATACATCCTCCTCCTTATCCTCAATATTACAACAACAATTTTTATAATACTAGTAGTACTACACTTCATCACCAACAACAACAGTACCACCACCCTTCTCCTGCTGCTGCTGCTGAGCACTTTAGTAATATGAATCCCCTCTATTATCTCCCCTCCTCTCCAATCACGCCTATGGCAACAAGTGGCGGCAGCAGTGGCGGTCTTCATCAACACTTGCAGGGGCATGGGCAGCAACAAGATCAGAGAAATGTGAATGTCCCAATTAATATGATAATTGATTCTGTGCCGGTTGCACATCACCACCGTGGTGGCAATAATAATAATAATAATAATACTAATAGTAGCGGAAAACGGCTGAGGCTATTTGGGGTGAACATGGAATGTGAATCTACTTCTTCTGCTAGTTCAGCAGCACCGCCACAACATGTGGCGGCAGCAACAACGTCAGGGGGAACTGCAGTGCTCTTTGATTTGGATCCCTCAAATTTCCAATATCGGCGCCAGCAGTGA 1326 0.457 MEAEVKGYCSDSREEVEEEEEGAADEEIIPITRGRGSQNSSSSRLQFELQTSQQLEEEEEEEEDGRKQVEEVDMMELRLGGGKGRKNKEEGGSSNSKKVVEEEEEEEEEEALPPVVVEKEHMFDKVVTPSDVGKLNRLVIPKQYAEKYFPLDSSNDKGILLNFEDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFHRGRHESYRHRLYIDWRPRSHSQHPYHHHHHLIPPQYPPPPPNFYHHYSSSSPLYTSQYYPATTAIHPPPYPQYYNNNFYNTSSTTLHHQQQQYHHPSPAAAAEHFSNMNPLYYLPSSPITPMATSGGSSGGLHQHLQGHGQQQDQRNVNVPINMIIDSVPVAHHHRGGNNNNNNNTNSSGKRLRLFGVNMECESTSSASSAAPPQHVAAATTSGGTAVLFDLDPSNFQYRRQQ* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0017 441 SMART B3_2 123 227 IPR003340 GO:0003677
Tpr6g0017 441 Pfam B3 DNA binding domain 123 223 IPR003340 GO:0003677
Tpr6g0017 441 MobiDBLite consensus disorder prediction 33 52 - -
Tpr6g0017 441 MobiDBLite consensus disorder prediction 53 67 - -
Tpr6g0017 441 MobiDBLite consensus disorder prediction 1 112 - -
Tpr6g0017 441 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 66 410 - -
Tpr6g0017 441 Gene3D - 116 239 IPR015300 -
Tpr6g0017 441 ProSiteProfiles B3 DNA-binding domain profile. 123 225 IPR003340 GO:0003677
Tpr6g0017 441 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 66 410 IPR044800 GO:0003700
Tpr6g0017 441 MobiDBLite consensus disorder prediction 68 100 - -
Tpr6g0017 441 Coils Coil 52 75 - -
Tpr6g0017 441 CDD B3_DNA 121 214 IPR003340 GO:0003677
Tpr6g0017 441 SUPERFAMILY DNA-binding pseudobarrel domain 120 216 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0017 Tpr-Chr6 230081 232970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0017 105 400 RAV Transcription Factor Family AT2G46870 45.079 3.65e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr6g0017 B3 2.2e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0017 - - mtr:MTR_7g117455 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0017 6 230081 232970 Tpr6g0017 6 230081 232970 ECH