Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0015 ATGAGCAGCAGCAGCAGCAGCAACAATGGAGGATATTATTCATCATCACATTCACAGTTTGGGGACACAACGCTGACCAAAGTGTTCGTTGGAGGACTTGCCTGGGAGACTCCCAAAGACACTCTCAGAGAACACTTTCAAAAGTACGGAGACATCCTTGAAGCTGTCATCATTTCTGATAAGCTTACCGGCAGATCCAAAGGCTACGGATTTGTTACGTTCAAGGAACCTGAGGCGGCTAACAAGGCTTGCCAGGAACCAACTCTCATCATCAATGGTCGCCGAGCCAACTGCAACATCGCATCTCTTGGTGCTCGCCGCCCAAGGACAAAGTCTTCTTCTTCTCCCACTGCTACTACTCCACCTTCTTCTCCTCCAAGCAGCCAGGTGCAGTGGTATTATCCGGTGGCCACACCCACAATGCCTACCCCATTCCATCATCAACACGCTCACACCCTTCCATTCTACATTGGAACAGATCCTCATATGATGAATTACAATTATAACTACGGTTTCCATTACAATCAGAAGCTGCTGAGCTATGGAAGCGGTGGGAGCTACGTGTATCCAAGGGTGGGTGCGATGCCAGTCATGTACCACCCTCTCTACAGAACCGAGGCTATGGGTGTCCCTGCACCTCAAATCTACCACCATTATGCCCCTTCCATCACTCCTACTCCTACTACATGTCCAGTTGGCACCGGTGAAATGCTTCAAAAGAGTAGTGGTCTGAGAAGAGCTTAG 744 0.4946 MSSSSSSNNGGYYSSSHSQFGDTTLTKVFVGGLAWETPKDTLREHFQKYGDILEAVIISDKLTGRSKGYGFVTFKEPEAANKACQEPTLIINGRRANCNIASLGARRPRTKSSSSPTATTPPSSPPSSQVQWYYPVATPTMPTPFHHQHAHTLPFYIGTDPHMMNYNYNYGFHYNQKLLSYGSGGSYVYPRVGAMPVMYHPLYRTEAMGVPAPQIYHHYAPSITPTPTTCPVGTGEMLQKSSGLRRA* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0015 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 94 IPR000504 GO:0003723
Tpr6g0015 247 PANTHER RNA-BINDING PROTEIN ARP1-RELATED 16 231 - -
Tpr6g0015 247 SUPERFAMILY RNA-binding domain, RBD 18 115 IPR035979 GO:0003676
Tpr6g0015 247 PANTHER GEO13361P1-RELATED 16 231 - -
Tpr6g0015 247 SMART rrm1_1 27 99 IPR000504 GO:0003723
Tpr6g0015 247 CDD RRM_RBM24_RBM38_like 26 101 - -
Tpr6g0015 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 115 IPR000504 GO:0003723
Tpr6g0015 247 MobiDBLite consensus disorder prediction 101 129 - -
Tpr6g0015 247 MobiDBLite consensus disorder prediction 106 129 - -
Tpr6g0015 247 Gene3D - 2 117 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0015 Tpr-Chr6 200121 201734 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0015 22 102 C2H2 Transcription Factor Family AT2G19380 40.741 2.58e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0015 - - mtr:MTR_7g117495 267.7