Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0010 ATGAGTGATACAAGTGATGATAATAATAATAATCTAGGTGATTCCCCAGCCGTTGATATAACCGGCAAGATCATGGTGGTCATCATAATAGTTCTCTTCATGGTTGTTGTTTCTTTTCTTTTCATTCATCTTTTTGCCAAGGGATTCTGGTGGAGCCAGAGGCGGCAGGGAGAAAACAATTCCCAATCCCGGCGGCGGGGGGGCCAAAGAAGGAGTGATGGTCTCGATGCTTCTGTACTAAAGTCCCTACCCGTATCGGTATTCAATTCCAAAGAAGAAGATGGTTTGGATTTGGAATGTTCGGTTTGCCTGTCGGAAGTAGTTGAAGGTGAAAAGTTGAGGGTTTTGCCTCAATGCAATCACAGGTTTCACATACACTGCATTGATATGTGGTTCCAATCACATTCAACTTGCCCTCTTTGCAGAACCACACTTGCAACTCCTCCTACTACTACTACCTTAGTAGTACAAGTAGAACAAGAACAAGAATCATCATCATCATCATCATCCGCTCCTGCTTTTCCAACAAATGTCTTGATTTGGGGAAACCACAACCAAGTAATCTCTTCTACTACTTTGGAACAGAACATTTCTTCTTCCTCTTCCAATATTCATAACAACAACACCACACATGATCATGTTGGAAATGGAATGTTAAGGATTGATATACCCAATGATTGTGACTGTGAGGCCACTGCTTCATCGTCATCGCCCTTGGGGACGGGAGGAGGGAGATTGAGGTCATTGAAGAGGCTTTTAAGCAGCAGAGCCTTAAGCAGCCTAAATCCATGGAGTCCCACTTCTTCTTCTTCTACTACTACACATGTCCAACAACAAACAAAACCAAAAGAAGCACCAGGACAGAGCTAG 870 0.4322 MSDTSDDNNNNLGDSPAVDITGKIMVVIIIVLFMVVVSFLFIHLFAKGFWWSQRRQGENNSQSRRRGGQRRSDGLDASVLKSLPVSVFNSKEEDGLDLECSVCLSEVVEGEKLRVLPQCNHRFHIHCIDMWFQSHSTCPLCRTTLATPPTTTTLVVQVEQEQESSSSSSSAPAFPTNVLIWGNHNQVISSTTLEQNISSSSSNIHNNNTTHDHVGNGMLRIDIPNDCDCEATASSSSPLGTGGGRLRSLKRLLSSRALSSLNPWSPTSSSSTTTHVQQQTKPKEAPGQS* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0010 289 MobiDBLite consensus disorder prediction 257 289 - -
Tpr6g0010 289 CDD RING-H2_EL5_like 99 142 - -
Tpr6g0010 289 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 5 257 IPR044675 -
Tpr6g0010 289 Pfam Ring finger domain 99 142 IPR001841 -
Tpr6g0010 289 SMART ring_2 100 141 IPR001841 -
Tpr6g0010 289 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Tpr6g0010 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 148 IPR013083 -
Tpr6g0010 289 PANTHER RING-H2 FINGER PROTEIN ATL3 5 257 - -
Tpr6g0010 289 SUPERFAMILY RING/U-box 93 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0010 Tpr-Chr6 167071 168367 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0010 1 254 C3H Transcription Factor Family AT1G53820 31.683 5.78e-37 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0010 - - mtr:MTR_7g117540 258.455