LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr5g3485	ATGCCAGTGAGGCGTTCTCTTCACTCACAATTCAACGTTTGCAAGTCCCTCTTGCGGGTGAAGCAGTTACATGCTTACCTTTTGAAGACGACTCATTTCTCACAAGACCCTTTTTATGCAACTCAAATCATTAGACTTTATGAATTTAACAAACACATTAACTATGCATACCATGTGTTCGACAAAACTTCCATTCGAACTGTCTACGTTTGGAATTCGATGATTCGAGCTTTTGCAAAGACTCAAAGATTTCGGAATGCAATCTCTCTTTTTAGAACCATGCTTCAGGCTGACATAAGGCCTGATAATTACACTTACGCTTGTGTTATACGTGCATGCTCTGATAACTTTGATTTTCGTATGCTAAGACTTGTTCATGGAAGTTCTGTGTCTGCAGGATTGGGAATGAACCCTATTTGTTGTAGTGCACTTGTCAGTGCTTATTCAAAACTTGGCTTTGTTAATGAAGCTTGTAGAGTGTTCAATGGGATTGCTGAACCGGATTTAGTTTTGTGGAATTCTTTGATTTCTGCTTATGTGTGTTCTGGTATGTGGGATATAGGGATTCAAATGTTTAGCTCAATGAGACATTCTGGGAAGAAGCCTGATGGGTTTACATTGGCTGGTGTGCTTGTGGGTATTGCGGATTCTAGCTTGCTGAGCATTGGCCAAGGATTACATGGTTTGAGTCAAAAGAGTGGGCTTGATTATGATTCTCATGTAGGTAGTTTACTGGTGGAGAAAAAAACATTTCCATCTTTTGAATCTTTTATAATAGAGGAAGAAGAAGGTTCAGGTGGTTATGGCATTGTTTACCGTGCCCAAAGAACAACTGATGGAAAAAGACTTGCTATAAAATGTCCTCATAGTAATGCTCATAAAAACCATGTAAATAATGAGCGGAATATGCTTGAGCGTTTTGGGGGTAAAAGCTTTATTATAAAGTTTGAAGGTTCGTTGAAAAGTGGCAACAGTGAATGCTTTGTTTTAGAACATTTTGAGCATGACAGACCTGAGGTTTTGAAAAAAGAAATTGATATCAGTGAGCTACAGTGGTATGCGTTTTGCATGTTCAAGGCACTTGCGTGCTTGCACAGAGAGGGAGTCGTTCACCGAGATGTCAAACCTGGAAACTTCCTTTTCTCTCGAAAGCTTAAGAAAGGCTACCTTATTGACTTCAACCTTGCCATGGATTTAAAGCAGAAGTACAATATCGGAAGTAAATCAAAGCCAAGCGTTGATGCATCCAATAATATTCCTCTGCCTTCTGGTCCTTCCCAGGTAGTTCAAGACAAGAATCTTGGAGGAACCATATCTCTAACATCCAATAAAAGGGAATTGACAGATCATAGGAAATATTCTGAAATTAATAGGCATATGAAGCCAAAGGCTAATAATGCTGGTCATCTGAAAAATTGTCCTGATAAGGCTGTTGCGATTTTACGTAGAGCACCAGGAGCAGATGGCTCAGGAATAACCTCTGCCAAAGATATTACTAGTACTAAGACTGCTTCTGCTGATAGGCTCCGAGAACCGATACCTTTCCGAGGAAGAAAGGAGCTTATCAGCCTCGTGCAGAATTCTATGCAATGTGCAAACAGTAGTTCAATTAAAAGTCCTACTTCTCAGAGGAAAAGGGTTACTGCTCCTTCAAGCAAGTCAGATGGCAGGACACTTCATCTTACACCGATGCCTATACATTCATCTAGGGTTGCTGTGGGATCATTTAGAAGCAAAGGGGATGGAAAACATAAAAGAGAGGGTCCTTGTGTTGGAACAAAGGGATTTCGTGCCCCAGAGGAGACAAGGCCATATTGGGAGCCTTATTATCATGCTGTGATTTTTATGGAAATTCCAAGTTGGCAGAAACTGTAG	1875	0.4043	MPVRRSLHSQFNVCKSLLRVKQLHAYLLKTTHFSQDPFYATQIIRLYEFNKHINYAYHVFDKTSIRTVYVWNSMIRAFAKTQRFRNAISLFRTMLQADIRPDNYTYACVIRACSDNFDFRMLRLVHGSSVSAGLGMNPICCSALVSAYSKLGFVNEACRVFNGIAEPDLVLWNSLISAYVCSGMWDIGIQMFSSMRHSGKKPDGFTLAGVLVGIADSSLLSIGQGLHGLSQKSGLDYDSHVGSLLVEKKTFPSFESFIIEEEEGSGGYGIVYRAQRTTDGKRLAIKCPHSNAHKNHVNNERNMLERFGGKSFIIKFEGSLKSGNSECFVLEHFEHDRPEVLKKEIDISELQWYAFCMFKALACLHREGVVHRDVKPGNFLFSRKLKKGYLIDFNLAMDLKQKYNIGSKSKPSVDASNNIPLPSGPSQVVQDKNLGGTISLTSNKRELTDHRKYSEINRHMKPKANNAGHLKNCPDKAVAILRRAPGADGSGITSAKDITSTKTASADRLREPIPFRGRKELISLVQNSMQCANSSSIKSPTSQRKRVTAPSSKSDGRTLHLTPMPIHSSRVAVGSFRSKGDGKHKREGPCVGTKGFRAPEETRPYWEPYYHAVIFMEIPSWQKL*	625

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr5g3485	624	MobiDBLite	consensus disorder prediction	532	557	-	-
	Tpr5g3485	624	Pfam	PPR repeat family	67	113	IPR002885	-
	Tpr5g3485	624	SUPERFAMILY	Protein kinase-like (PK-like)	248	403	IPR011009	-
	Tpr5g3485	624	TIGRFAM	PPR: pentatricopeptide repeat domain	69	102	IPR002885	-
	Tpr5g3485	624	TIGRFAM	PPR: pentatricopeptide repeat domain	170	203	IPR002885	-
	Tpr5g3485	624	Pfam	PPR repeat	170	199	IPR002885	-
	Tpr5g3485	624	Pfam	PPR repeat	140	162	IPR002885	-
	Tpr5g3485	624	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	168	202	IPR002885	-
	Tpr5g3485	624	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	67	101	IPR002885	-
	Tpr5g3485	624	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	369	381	IPR008271	GO:0004672\|GO:0006468
	Tpr5g3485	624	Gene3D	Tetratricopeptide repeat domain	124	222	IPR011990	GO:0005515
	Tpr5g3485	624	ProSiteProfiles	Protein kinase domain profile.	257	624	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr5g3485	624	Gene3D	Tetratricopeptide repeat domain	5	123	IPR011990	GO:0005515
	Tpr5g3485	624	PANTHER	OS01G0545900 PROTEIN	10	246	-	-
	Tpr5g3485	624	PANTHER	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	10	246	-	-
	Tpr5g3485	624	SMART	serkin_6	257	498	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr5g3485	624	Gene3D	Transferase(Phosphotransferase) domain 1	239	413	-	-
	Tpr5g3485	624	Pfam	Protein kinase domain	261	404	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr5g3485	Tpr-Chr5	57761863	57768267	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr5g3485	84	247	Glycoside Hydrolase	AT3G49170	26.036	3.64e-11	64.3

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	Group-Pl-2	Tpr5g3485		Pkinase	9.6e-22	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr5g3485	K02214		-	gmx:100795742	514.612