Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3480 ATGGATCAAGTGAGAGGAAGTAATAAACCTTCTAGCTCTACAACCAAAGTTGAAAGAAGACTGGTTGAGAAAAACAGAAGAAATCAGATGAAGATCCTTCACTCCAAACTCAACTCTCTTCTCCCTAACTATAATCCCAAGGAATTGGCGTTACCGTTACCGGACCAAGTAGACGAGGCGATAAACTACATAAAGAGTTTAGAGGCAAATGTGAATATGGCTAAGGAGAAAAAAGAGAGATTATTAGAGGGAAAGAAGAAAAGATCACGCAAATATTTTTCGGATCTACCAAAATTGTCACGTTTTGAAATTCACGAAATTGGTTCTTCTCTACAAATCATTCTCACTTGCGGGTTAGATAACCAGTTCATTTTCTATGAAATCATTCGCGTGTTACATGAAGAGAATATAGACGTTAGAAGTATCAATTCCTCGACTGTTGGAGACAATTCACTCATTCATGTCGACGTGCATGCTGAGATTCCTCAATCTTGTGTTCAATTTGGAGCAACAAAAGTGAGTGAGAGATTGAAAAGGTTTGTGAATGGATCCTGCAGTGATGTGAAAATGCAGCCTGATGAGTTGTGGGATTTTGAAATTGGAACTGATTTGTGGGGTTTAATTTCTAGTTAG 633 0.3807 MDQVRGSNKPSSSTTKVERRLVEKNRRNQMKILHSKLNSLLPNYNPKELALPLPDQVDEAINYIKSLEANVNMAKEKKERLLEGKKKRSRKYFSDLPKLSRFEIHEIGSSLQIILTCGLDNQFIFYEIIRVLHEENIDVRSINSSTVGDNSLIHVDVHAEIPQSCVQFGATKVSERLKRFVNGSCSDVKMQPDELWDFEIGTDLWGLISS* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3480 210 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 14 67 IPR011598 GO:0046983
Tpr5g3480 210 MobiDBLite consensus disorder prediction 1 25 - -
Tpr5g3480 210 MobiDBLite consensus disorder prediction 1 15 - -
Tpr5g3480 210 Pfam Helix-loop-helix DNA-binding domain 17 68 IPR011598 GO:0046983
Tpr5g3480 210 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 188 IPR015660 GO:0003700|GO:0006357
Tpr5g3480 210 Gene3D - 5 97 IPR036638 GO:0046983
Tpr5g3480 210 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 11 188 - -
Tpr5g3480 210 Coils Coil 57 84 - -
Tpr5g3480 210 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 13 83 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3480 Tpr-Chr5 57723553 57724923 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3480 9 183 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 39.062 5.48e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr5g3480 HLH 0.00016 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3480 - - gmx:100817883 273.092