Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3465 ATGGCCTCTTCCACATCACTACTCTTCCTTTGCCTCTGCTTCTTCTTTAGAAGTACTTCTTGTGATATGTTAGATACCACACAGCAAGGAAACATTCCATCTTGGGTTAAACTAGCTGACAGGAAGCTGCTACAGGCGAGTGATATGCCTGTCGATGCTGTGGTAGCTCCTGATGGGAGTGGGCATTATACCAAGGTGATGGATGCTGTGTTAGCAGCACCTAATGGTAGCCACATACGCTATATAATACACATTAAGGAAGGAATTTATAATGAGCATGTTGTGATCAGTTCTAACAAGTCAAACCTCATGATGATTGGAGATGGGATGGATGCCACTATCATCTCCGGCGACTTAAGCTCGGGGAGAGATAAGCTGGACACATACTTCACTTCTACCGTTTTTGTTGATGGCCCAGGGTTCATTGCTCGGGACATTACATTTAGGAACACTGCAGGTCCCGAAAATGGTCAAGCAGTGGCACTCTTGTCCAACTCCAACACCTCTGTCTTATACCGATGTGGAATATATGGCTTCCAAGACAGTCTATGCGCGAACAAAGGACTCCAATTCTACAAGGACTGCAAAATCAGTGGTTCGGTGGACTTCATCTTCGGCTATGCTGCTGCGGTGTTCCAAGACTGCAATATATTAGTACGAAAAGGGTCAACCAGCCAGCACACCATCACCGCACACGGAGGACCAGCGAGCCCTGACCAACCATTTGGTTTCTCTTTTCAATTCTGTAACATATCCGCCGATTCTGACCTTCTCCCATTTCTTACGTCCACCCAAACATTCCTCGGCAGGCCGTGGCATCCGTACTCACGTGTGGTTTTCATGGAATGCTACATTAGTGATGTGTTGAGCCCGGAAGGGTGGTTGGAATGGAATGGGACTCCAGTTAATTTGGACACGTTGTATTACGCCGAGTACAATAATCATGGACCCGGAGCTGGAGTAGAAAACCGTGTAAAATGGTCAGGGTACCATGTTTTGACTGATGCTAGCCAGGCTAGTAATTTCACTGTGGCGCAATTGATTTCGGGGGATCAATGGTTACCTGCAACAAGGGTCCCATTCACCCCTGGACTTGGGAATTAG 1104 0.471 MASSTSLLFLCLCFFFRSTSCDMLDTTQQGNIPSWVKLADRKLLQASDMPVDAVVAPDGSGHYTKVMDAVLAAPNGSHIRYIIHIKEGIYNEHVVISSNKSNLMMIGDGMDATIISGDLSSGRDKLDTYFTSTVFVDGPGFIARDITFRNTAGPENGQAVALLSNSNTSVLYRCGIYGFQDSLCANKGLQFYKDCKISGSVDFIFGYAAAVFQDCNILVRKGSTSQHTITAHGGPASPDQPFGFSFQFCNISADSDLLPFLTSTQTFLGRPWHPYSRVVFMECYISDVLSPEGWLEWNGTPVNLDTLYYAEYNNHGPGAGVENRVKWSGYHVLTDASQASNFTVAQLISGDQWLPATRVPFTPGLGN* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3465 367 SUPERFAMILY Pectin lyase-like 50 364 IPR011050 -
Tpr5g3465 367 ProSitePatterns Pectinesterase signature 2. 197 206 IPR033131 -
Tpr5g3465 367 Gene3D - 46 365 IPR012334 -
Tpr5g3465 367 Pfam Pectinesterase 52 351 IPR000070 GO:0030599|GO:0042545
Tpr5g3465 367 ProSitePatterns Pectinesterase signature 1. 77 96 IPR018040 -
Tpr5g3465 367 PANTHER PECTINESTERASE 24 365 - -
Tpr5g3465 367 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 24 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3465 Tpr-Chr5 57544701 57552689 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3465 33 365 Carbohydrate Esterase AT3G43270 54.790 7.33e-129 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3465 K01051 - gmx:100777500 432.565