Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3462 ATGAATACTCATGTTTGGAACAGCAATGTGAACGGCTATGATCATTTTGACCCTTCCACAACGACACTGTTTCAAGACATGGAGGCTCCGGCTGCAGCAGCTTCGCCAATTTCCAAGAGTCCGAGCTTCCGGAGCATTGTCTTGGCGGAGAATTGGGCAGAGCTGCCGTTGAAGGAGGATGATACCGATGACATGGTAATCTACGGGGCTTTGCATGAAGCTGCAACTACCACTGGCTGGTTCCCCAGTAGTAACGAGGTGAACAATGTCGATGTAGCCGTTAAAATAGAAGATCAAGGTCAAAGTAGTGATACTTCGGAGGCACGTGTGATTCACGCGCCAACTAATGGTAAAAGTTTAGGCTACCGTGGAGTGAGAAGGAGGCCTTGGGGGAAATATGCTGCCGAGATAAGGGATTCTAAAAGAAATGGCGCGAGGGTGTGGCTTGGGACTTATGAAACAGCTGAGAATGCTGCTTTGGCTTATGATCGAGCTGCGTTTAAGTTACGCGGCTCGAAAGCCAAGCTGAATTTTCCTCACTTGATCAGTTCAGATTACACTGAATTGGTTAATATCACGCGGAAAGAGCGCTAG 594 0.4815 MNTHVWNSNVNGYDHFDPSTTTLFQDMEAPAAAASPISKSPSFRSIVLAENWAELPLKEDDTDDMVIYGALHEAATTTGWFPSSNEVNNVDVAVKIEDQGQSSDTSEARVIHAPTNGKSLGYRGVRRRPWGKYAAEIRDSKRNGARVWLGTYETAENAALAYDRAAFKLRGSKAKLNFPHLISSDYTELVNITRKER* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3462 197 CDD AP2 122 181 IPR001471 GO:0003700|GO:0006355
Tpr5g3462 197 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Tpr5g3462 197 PRINTS Ethylene responsive element binding protein signature 161 181 IPR001471 GO:0003700|GO:0006355
Tpr5g3462 197 SMART rav1_2 121 185 IPR001471 GO:0003700|GO:0006355
Tpr5g3462 197 PANTHER BNAC04G53270D PROTEIN 20 195 - -
Tpr5g3462 197 Pfam AP2 domain 121 171 IPR001471 GO:0003700|GO:0006355
Tpr5g3462 197 PANTHER DNA-BINDING DOMAIN 20 195 IPR044808 GO:0003700|GO:0009873
Tpr5g3462 197 ProSiteProfiles AP2/ERF domain profile. 121 179 IPR001471 GO:0003700|GO:0006355
Tpr5g3462 197 SUPERFAMILY DNA-binding domain 121 180 IPR016177 GO:0003677
Tpr5g3462 197 Gene3D AP2/ERF domain 121 180 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3462 Tpr-Chr5 57505646 57506554 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3462 39 197 AP2-EREBP Transcription Factor Family AT2G44840 54.088 4.97e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr5g3462 AP2 1.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3462 K09286 - gmx:100793366 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g3462 5 57505646 57506554 Tpr5g3462 5 57505646 57506554 ECH