Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3461 ATGGATGCTACAATATTTATGTCTAGTGATTTTCCTTCATTTGAATCTCTTCAAATTCAAAACCACTTGTTTGATCTTGAACTTGAACACCCTTTCATCATGGATGCTAATTCCAACCATCAATTGTACGGTTCACTTCCAAGTCCCACGTTATTAGATTCTAATGTCAATGAAGACGCGTGTAAAATCGGATCATCAACGGCTTTGTGTAAACCTAGAGTGCCAGCACCGGAATGGAAGCGATATAGAGGCGTAAGGCGAAGGCCGTGGGGGAAATTTGCCGCCGAGATAAGGGATCCAAAGAAGAATGGAGCTAGAGTTTGGCTTGGAACTTACAAAACCGAAGAAGAAGCTGGTTTGGCTTACGATAAAGCCGCTTTCAAGATGCGTGGTAGAAAAGCCAAGCTCAATTTTCCCCACCTCATCGGCTCTGATTTGCCGGTGGAGCCGATGATAGTGGTGGAAGCTTCGGAGAAGACTCTGCAAAAATCTAATTTGGATTCCTCGCGAGGGATCATAAAGAAGAAGAAGAACTTAGTTGATGTATTGAATAGGTTAGCTAATAGTAAAAGAGAGTTAAGTGGAGGATTTGAAATGGGTTTAGGGATTGATAATGTTCATGTCCATCAATGGCTGAATGATTCTGTGCTGTAA 654 0.4205 MDATIFMSSDFPSFESLQIQNHLFDLELEHPFIMDANSNHQLYGSLPSPTLLDSNVNEDACKIGSSTALCKPRVPAPEWKRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYKTEEEAGLAYDKAAFKMRGRKAKLNFPHLIGSDLPVEPMIVVEASEKTLQKSNLDSSRGIIKKKKNLVDVLNRLANSKRELSGGFEMGLGIDNVHVHQWLNDSVL* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3461 217 ProSiteProfiles AP2/ERF domain profile. 81 139 IPR001471 GO:0003700|GO:0006355
Tpr5g3461 217 SUPERFAMILY DNA-binding domain 81 140 IPR016177 GO:0003677
Tpr5g3461 217 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 38 190 - -
Tpr5g3461 217 Pfam AP2 domain 81 131 IPR001471 GO:0003700|GO:0006355
Tpr5g3461 217 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Tpr5g3461 217 PRINTS Ethylene responsive element binding protein signature 121 141 IPR001471 GO:0003700|GO:0006355
Tpr5g3461 217 Gene3D AP2/ERF domain 80 140 IPR036955 GO:0003700|GO:0006355
Tpr5g3461 217 PANTHER DNA-BINDING DOMAIN 38 190 IPR044808 GO:0003700|GO:0009873
Tpr5g3461 217 SMART rav1_2 81 145 IPR001471 GO:0003700|GO:0006355
Tpr5g3461 217 CDD AP2 80 141 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3461 Tpr-Chr5 57499885 57500844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3461 12 144 AP2-EREBP Transcription Factor Family AT2G44840 48.592 5.25e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr5g3461 AP2 4.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3461 K09286 - gmx:100527194 191.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g3461 5 57499885 57500844 Tpr5g3461 5 57499885 57500844 ECH