Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3456 ATGCATCAGAAGACAATTGACATGGCTGCCGCCGCTGCCAGAACACTATGGCCAACTCAGTGGACTCGTGAAGACAACAAGCTTTTCGAGAAAGCTCTAATTACTGTGCCGGTGCATTCATCTAACCGGTGGGAGGAAATTGCCGGACACGTTCCCGGTAAGTCAGCAGCACAAGTGAAGGATCACTACGAGGATTTGGTCCATGATATTTTGGAAATTGAATCGGGTCGGGTTGAACTTCCAAACTATCCTGATGACCTGGATGTGAATAGTGGCAGTAGAATGTCTAGACACGGTGATAACGAGAAGCAGAAGAAGAGGAAAGGAAAACCATGGACCGAAGAAGAACATAAGTCGTTTCTTTCTGGGCTTAAGGAATACAAAGAAGGGGAATGGAAACTCATTTCAATATACTATGTTAAGACAAGAACACCAACACAAGTAGCAAGTCATGCTCAAAAGTACTTTCTTCGCAAGAATGAAGCGAATAAACATAAAGAGAGGAAAAGATCAAGCATTCATGACATTACATTGGAAGATAGTAACTCAGCTCCAACGCCTATTGATCGGAATTGTGTTCTGCCTCCCGGTGTTGGTTCATTGCACCAGTCTGAATGA 618 0.4385 MHQKTIDMAAAAARTLWPTQWTREDNKLFEKALITVPVHSSNRWEEIAGHVPGKSAAQVKDHYEDLVHDILEIESGRVELPNYPDDLDVNSGSRMSRHGDNEKQKKRKGKPWTEEEHKSFLSGLKEYKEGEWKLISIYYVKTRTPTQVASHAQKYFLRKNEANKHKERKRSSIHDITLEDSNSAPTPIDRNCVLPPGVGSLHQSE* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3456 205 SMART sant 17 69 IPR001005 -
Tpr5g3456 205 SMART sant 108 158 IPR001005 -
Tpr5g3456 205 CDD SANT 21 67 IPR001005 -
Tpr5g3456 205 MobiDBLite consensus disorder prediction 160 176 - -
Tpr5g3456 205 SUPERFAMILY Homeodomain-like 105 160 IPR009057 -
Tpr5g3456 205 ProSiteProfiles Myb-like domain profile. 21 67 IPR001005 -
Tpr5g3456 205 CDD SANT 111 156 IPR001005 -
Tpr5g3456 205 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 18 196 - -
Tpr5g3456 205 Gene3D - 110 162 - -
Tpr5g3456 205 Gene3D - 18 80 - -
Tpr5g3456 205 ProSiteProfiles Myb-like domain profile. 104 156 IPR001005 -
Tpr5g3456 205 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 18 196 IPR043363 -
Tpr5g3456 205 MobiDBLite consensus disorder prediction 82 115 - -
Tpr5g3456 205 MobiDBLite consensus disorder prediction 91 115 - -
Tpr5g3456 205 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 109 159 IPR006447 GO:0003677
Tpr5g3456 205 Pfam Myb-like DNA-binding domain 110 156 IPR001005 -
Tpr5g3456 205 Pfam Myb-like DNA-binding domain 20 65 IPR001005 -
Tpr5g3456 205 MobiDBLite consensus disorder prediction 160 205 - -
Tpr5g3456 205 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 160 IPR017930 -
Tpr5g3456 205 SUPERFAMILY Homeodomain-like 19 75 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3456 Tpr-Chr5 57445496 57446781 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr5g3456 Myb_DNA-binding 5.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3456 - - gmx:548010 226.098