Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3445 ATGGGTGAGAAAGATGATGATTTTAGTTTGGGTTTAGGTTTGAGTTTAAGTTTAGGGTGTGGTGATTATGCAAAAAATAATAATGAAATTCCTTTGAAGGTGAATCACATGCAAAAGCCTCCTCAATCAGTTTCAAACCAAAGGGTTTCATTCAACAACTTGTTCCATTCTCATGATCTGAGTACCGAAACGAGGTCGTTTCTCCGCGGAATAGACGCAAACTCGCCGCATCCATCAGCTCCGGCGGCGGCGTTCGAAGATGAGAACGGAGTTTCTTCACCAAACAGCACCGTATCAAGTATCAGTGGAAAGAGAAGCGAAAGAGAAGGTAATGGAGATGAAAACGACGCTGTTGAGAGAGCTTCATGTTCTCGCGGTGGTGGAAGTGATGATGATGACGGCGGAGGTTGCGGCGGCGATGGTGACTCTTCAAGGAAGAAGCTGAGGTTGTCAAAGGAACAGTCAATGTTGCTTGAAGAAACTTTCAAGGAGCATAATACACTGAATCCGAAACAAAAGCAAGCATTGGCTAAGCAATTGAATCTGAAGCCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGAGCAAGGACTAAGTTGAAGCAGACTGAAGTGGATTGCGAATATTTGAAGAGATGCTGCGAGACTCTAACTGAAGAAAATAGAAGGTTGCAAAAGGAAGTGCAAGAGCTTAGGGCATTGAAGTTATCTCCACAACTCTACATGCAAATGAACCCTCCCACCACTCTTACAATGTGCCCTTCATGCGAGCGTGTCGCCGTATCATCTGCATCCTCCTCGTCAGCAGCTGCACCCTCTGCTCCAGCTCTAGCTCCAGCTAACTGCAACCCGTCAGGTCCGAGTGTTCAACGACCAGTACCTATCAACCCATGGGCGGCAATGGCTAGTCAAAACCGTACTCGGCCATGA 930 0.4645 MGEKDDDFSLGLGLSLSLGCGDYAKNNNEIPLKVNHMQKPPQSVSNQRVSFNNLFHSHDLSTETRSFLRGIDANSPHPSAPAAAFEDENGVSSPNSTVSSISGKRSEREGNGDENDAVERASCSRGGGSDDDDGGGCGGDGDSSRKKLRLSKEQSMLLEETFKEHNTLNPKQKQALAKQLNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKEVQELRALKLSPQLYMQMNPPTTLTMCPSCERVAVSSASSSSAAAPSAPALAPANCNPSGPSVQRPVPINPWAAMASQNRTRP* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3445 309 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 9 303 - -
Tpr5g3445 309 MobiDBLite consensus disorder prediction 78 147 - -
Tpr5g3445 309 MobiDBLite consensus disorder prediction 264 309 - -
Tpr5g3445 309 ProSiteProfiles 'Homeobox' domain profile. 141 201 IPR001356 GO:0003677
Tpr5g3445 309 SMART halz 201 244 IPR003106 GO:0006355|GO:0043565
Tpr5g3445 309 SMART HOX_1 143 205 IPR001356 GO:0003677
Tpr5g3445 309 Coils Coil 207 237 - -
Tpr5g3445 309 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Tpr5g3445 309 PANTHER - 9 303 - -
Tpr5g3445 309 CDD homeodomain 145 202 IPR001356 GO:0003677
Tpr5g3445 309 Pfam Homeobox associated leucine zipper 201 235 IPR003106 GO:0006355|GO:0043565
Tpr5g3445 309 SUPERFAMILY Homeodomain-like 130 202 IPR009057 -
Tpr5g3445 309 Gene3D - 137 206 - -
Tpr5g3445 309 Pfam HD-ZIP protein N terminus 1 109 IPR006712 GO:0005634
Tpr5g3445 309 MobiDBLite consensus disorder prediction 106 120 - -
Tpr5g3445 309 ProSitePatterns 'Homeobox' domain signature. 176 199 IPR017970 GO:0000981|GO:0006355
Tpr5g3445 309 MobiDBLite consensus disorder prediction 89 105 - -
Tpr5g3445 309 Pfam Homeodomain 145 199 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3445 Tpr-Chr5 57391258 57394608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3445 1 306 Homeobox Transcription Factor Family AT3G60390 59.146 5.20e-105 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tpr5g3445 HD-ZIP_N 7.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3445 K09338 - gmx:100798480 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g3445 5 57391258 57394608 Tpr5g3445 5 57391258 57394608 ECH