Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3444 ATGAGAGTGATGCTGTTAACCCTTTCACGCCATTTATGTACGAGAACCAACAACACCACCAACAACATAACAACAACCTTAAAAACATCAAAATTGAAAATCCCTTGTCGGTACAAAAAGGTTGCAATGTCACAAGCTCAAAAAGCACTCACTGATTACCTCCATTCCACAAGGTCCATCCCTTATGCTTTTGCAGATAAAATTTCCAAAAACTCTTTTCATTCTCTCTCCAATCTCATTTCAAAGTTGGGTTCTTTTTCACCTTCTGATTTCACCAAGAAGCTTGATAAGTACTTAAGGTATAACCCAATTAATGAATTTGAGTTTTTCTTTGAAAGTATTGGAATTCAATATACTCATGTTTCATCTTTATTACCTCATGATAAGTTTTTCTTTTGTGAAGATGGGTCACTTCTTGATTCTGCTTGTGTACTTTGTGAATTTGGGTTTCCTTGGGATAAGATTGGTTTGATTTATATGGAGAGTGGTTTTATGTTTAGGAAAAGTGGTTTTGAGTTAAAGGGTAGGTTTAGTTTGTTGAAAAGATATGGTTTTTCTAATGTGCAAATTGTTGGGATATGTTTGACTTTTCCCTTTGTTTTTGGTGTTGAGGAAGGGGAATTTGTTGATGAGATTGATGGGCTGCTTTCTGATTTGAGAGTTGTGTTTTTGGATTTTGATTTGGGAGGGTTTGTTAATGGGAATGTGGATGTTTGGCATGAGGTTTGTAGGAAAATTAAAGTGTTTTATGATTTGAATGATGGTAAGGGGAAGATAGGGGAACTCGTCGGAAGGAATAAACATGTGATTCTTGAATATGGAGAAAAAGAGTTGATTGAAAAAGTTGAGTATTTTTGTAGATTTGGTGTCGAGAAGGTGGAAGTAGCTCGGTTGATTCTACAAGGTTCGGAATTGTTGAATCTTGATTTGGAAACGCCGGTGATTAATGTGTTGAAGCTGTTGAAACACATTGGAATGAACTCGAAAGGTCTTGGTGATGTACGGAAGAACTATGCTCATGTGTTGGGAACGATAAAAATGGCTAATCTTCCCAATGTGATGAGAGCTATGGGTTTACGTGAGTGGTTTTTCGATAAAATCAAAGATGGGAATCATAAGCTTTTAGTGAATTTTGTCACAAGCTATCCCAATGAAGAGCGTGATAAAGGTTATCGAGATGGTTTGAAGACAATTCATGATGCAAGAACACCGACTCATAATATGAATAAATTAAATTTCATGCATAATATTGGCTTCGGTGAAAATGCTATGACCATGGATATCTTAACTCACATGCATGGAACAAGCGAAGAGTTACAAGAAAGATTTGATTGCCTTCTAGGTTTAGGGATTGAATTCTCAAAGCTGTGTAAGATAATCACAAAGAAACCAAAGATTCTAAGCCAAAATCCTGAAACCCTAGAGAAAAAGATTAATTTCCTTTGTCAGGAGATGGGAAAATCCTTGGAGCTTTTGGACACTTTTCCGGGATTTATATATTTTGACTTAGAGAACCGAATTAAGCCGAGGTTCAGATTCTATACGTGGGTTATAGAAAAGGGATTGTCTTCCAAAAAATATTCCATTTCAAGCATGATTGCGACTAGCGACAAGAATTTCGTTGGCCGTGCTTTTAAAATTCACCCGGCCGCTCCAAAACATTGGTTTGAGCAATTCTATCCCAATAAATTGTGA 1695 0.3646 MRVMLLTLSRHLCTRTNNTTNNITTTLKTSKLKIPCRYKKVAMSQAQKALTDYLHSTRSIPYAFADKISKNSFHSLSNLISKLGSFSPSDFTKKLDKYLRYNPINEFEFFFESIGIQYTHVSSLLPHDKFFFCEDGSLLDSACVLCEFGFPWDKIGLIYMESGFMFRKSGFELKGRFSLLKRYGFSNVQIVGICLTFPFVFGVEEGEFVDEIDGLLSDLRVVFLDFDLGGFVNGNVDVWHEVCRKIKVFYDLNDGKGKIGELVGRNKHVILEYGEKELIEKVEYFCRFGVEKVEVARLILQGSELLNLDLETPVINVLKLLKHIGMNSKGLGDVRKNYAHVLGTIKMANLPNVMRAMGLREWFFDKIKDGNHKLLVNFVTSYPNEERDKGYRDGLKTIHDARTPTHNMNKLNFMHNIGFGENAMTMDILTHMHGTSEELQERFDCLLGLGIEFSKLCKIITKKPKILSQNPETLEKKINFLCQEMGKSLELLDTFPGFIYFDLENRIKPRFRFYTWVIEKGLSSKKYSISSMIATSDKNFVGRAFKIHPAAPKHWFEQFYPNKL* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3444 564 PANTHER CGI-12 PROTEIN-RELATED 26 559 IPR003690 GO:0003690|GO:0006355
Tpr5g3444 564 PANTHER TRANSCRIPTION TERMINATION FACTOR MTEF18, MITOCHONDRIAL 26 559 - -
Tpr5g3444 564 SMART mt_12 457 488 IPR003690 GO:0003690|GO:0006355
Tpr5g3444 564 SMART mt_12 261 291 IPR003690 GO:0003690|GO:0006355
Tpr5g3444 564 SMART mt_12 296 327 IPR003690 GO:0003690|GO:0006355
Tpr5g3444 564 SMART mt_12 489 521 IPR003690 GO:0003690|GO:0006355
Tpr5g3444 564 Gene3D Transcription termination factor 3, mitochondrial 235 559 IPR038538 -
Tpr5g3444 564 Gene3D Transcription termination factor 3, mitochondrial 80 224 IPR038538 -
Tpr5g3444 564 Pfam mTERF 436 540 IPR003690 GO:0003690|GO:0006355
Tpr5g3444 564 Pfam mTERF 245 345 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3444 Tpr-Chr5 57376246 57381105 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tpr5g3444 mTERF 2.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3444 - - gsj:114418754 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g3444 5 57376246 57381105 Tpr5g3444 5 57376246 57381105 ECH