Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3419 ATGGAAAAACATATCAATATAGAAGAAAGTGATGCTAATGAAAATTTTGCTACATCCTCAACAACATCATCGACTTCATCAAATTCAGATACAAGCACCAGACACGACACAAAAGCCTCTCCAAAGGATTGCAAGAAGAGGAAGAGAAATAGTGAAAGTGATGAAAATAATAGCAAACATCCAACTTATAGAGGAGTTAGGATGAGAAATTGGGGAAAATTTGTTTGTGAGATTCGTGAGCCGAAGAAAAAATCAAGAATATGGCTTGGAACATACCCTACAGCTGAAATGGCAGCTAGAGCACATGATGTAGCTGCTTTAGCTATAAAAGGTCATTCAGCATACCTTAATTTCCCTGAATTAGCAAAAGCACTTCCAAAGCCAATAAGCACTTCTCCAAAAGACATTCAAGCTGCAGCTGCAAAAGCAGCTAATAACACTTCATTTGAAGCTCAAGTTGAAGCAAGACAAGAAAATCAACATGACTCCTCTTCAAGTTCAACATTTACTAATGATGATGCTACATTGTTTGATTTGCCAGATCTTTTTCCTGATGATGGAAACAATGGACTTTGTTCTTATTCTTCAAAAAATTCTTCTTGGTATTTATGTTCTGTTGATAGTGGATTTAGGCTTGAGGAACCATCTTTTTGGGAGAAATACTAG 666 0.3634 MEKHINIEESDANENFATSSTTSSTSSNSDTSTRHDTKASPKDCKKRKRNSESDENNSKHPTYRGVRMRNWGKFVCEIREPKKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPELAKALPKPISTSPKDIQAAAAKAANNTSFEAQVEARQENQHDSSSSSTFTNDDATLFDLPDLFPDDGNNGLCSYSSKNSSWYLCSVDSGFRLEEPSFWEKY* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3419 221 MobiDBLite consensus disorder prediction 11 34 - -
Tpr5g3419 221 MobiDBLite consensus disorder prediction 150 170 - -
Tpr5g3419 221 Gene3D AP2/ERF domain 62 120 IPR036955 GO:0003700|GO:0006355
Tpr5g3419 221 Pfam AP2 domain 61 112 IPR001471 GO:0003700|GO:0006355
Tpr5g3419 221 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 221 - -
Tpr5g3419 221 SMART rav1_2 62 125 IPR001471 GO:0003700|GO:0006355
Tpr5g3419 221 MobiDBLite consensus disorder prediction 1 64 - -
Tpr5g3419 221 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Tpr5g3419 221 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Tpr5g3419 221 ProSiteProfiles AP2/ERF domain profile. 62 119 IPR001471 GO:0003700|GO:0006355
Tpr5g3419 221 SUPERFAMILY DNA-binding domain 62 120 IPR016177 GO:0003677
Tpr5g3419 221 MobiDBLite consensus disorder prediction 35 62 - -
Tpr5g3419 221 CDD AP2 63 121 IPR001471 GO:0003700|GO:0006355
Tpr5g3419 221 PANTHER ETHYLENE RESPONSE FACTOR 15 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3419 Tpr-Chr5 57141898 57142976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3419 45 217 AP2-EREBP Transcription Factor Family AT2G44940 50.935 4.33e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr5g3419 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3419 - - mtr:MTR_8g006410 292.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g3419 5 57141898 57142976 Tpr5g3419 5 57141898 57142976 ECH