Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3408 ATGTTGGACTATGAATGGGGTAACCCAACAAACATCATGCTTACAGGAAATGAAGACAATTCCTCCGCCGCAGCTTCCGATCAAGCTCAGCGTCAAATCTTCGACCACTATGCTTCTCAAGCCATGTTATCCGACAACTACCTAAACGGGCCTGGGCCGACAATCAACACAAACACTGGTGAATTTACCCACCATCACCATCAGCAGCAGCAACATCACTTTAGCCCACAAGCCCAACAGCAGCAACATCAAATTCACCACTCTTTTTTCGACCCACGCGCTTTCCATGGCGCGTCTTCAACTGGTTCTTACCCTCCACCACAACCTCAACCTCCTTCTATGCTCTCTCTAGACCCTCTATCTGGTCATCATGGAGGACATGGGTCTGGATTCCTTCTCGTGCCCAAGTCTGAGGATCTTAATAGACCCATGGACTTTGTCGGCTCGAGAATTGGACTCAACCTTGGCGGCCGGACTTACTTTTCGTCTTCTGAAGACGACTTTGTCAGCCGCCTTTATCGTCGGTCTAGACAGCCTGAACCGGGTTCATTGGGTTCGTCCAACTCCCCGAGGTGTCAGGCTGAAGGATGCAATGCTGATCTGTCTCAGGCGAAGCACTACCACCGCCGTCATAAGGTTTGTGAGTTTCACTCCAAGGCTGCCACCGTCATAGCCGCTGGGTTGACTCAACGATTCTGCCAGCAATGCAGCAGGTTCCATCTTCTTTCTGAGTTCGATAATGGAAAACGTAGCTGCAGAAAGAGATTGGCAGATCATAATCGTCGAAGGAGAAAAACTCAGCACCCAAATACTCAAGATATTAACAAATCTTCAGAAAATGCTGCTACAAGGTCCCCGCCGGAGTCGGGAACTCAAACTACATCATCGGTGACGGTGGCCGTTTCTCCACCGGATTATTTTCGACAAAAGTCTTACCAAAGCTCAAGCCCTTCAACAACATCAAACTCATTGTTTTTCTCCAGCGGGTAG 990 0.4919 MLDYEWGNPTNIMLTGNEDNSSAAASDQAQRQIFDHYASQAMLSDNYLNGPGPTINTNTGEFTHHHHQQQQHHFSPQAQQQQHQIHHSFFDPRAFHGASSTGSYPPPQPQPPSMLSLDPLSGHHGGHGSGFLLVPKSEDLNRPMDFVGSRIGLNLGGRTYFSSSEDDFVSRLYRRSRQPEPGSLGSSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQHPNTQDINKSSENAATRSPPESGTQTTSSVTVAVSPPDYFRQKSYQSSSPSTTSNSLFFSSG* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3408 329 SUPERFAMILY SBT domain 190 269 IPR036893 GO:0003677|GO:0005634
Tpr5g3408 329 MobiDBLite consensus disorder prediction 255 329 - -
Tpr5g3408 329 MobiDBLite consensus disorder prediction 271 329 - -
Tpr5g3408 329 Pfam SBP domain 192 265 IPR004333 GO:0003677
Tpr5g3408 329 ProSiteProfiles Zinc finger SBP-type profile. 189 266 IPR004333 GO:0003677
Tpr5g3408 329 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 75 313 IPR044817 GO:0003677
Tpr5g3408 329 Gene3D - 182 253 IPR036893 GO:0003677|GO:0005634
Tpr5g3408 329 SUPERFAMILY beta-sandwich domain of Sec23/24 63 308 - -
Tpr5g3408 329 MobiDBLite consensus disorder prediction 63 85 - -
Tpr5g3408 329 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 8 75 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3408 Tpr-Chr5 57011474 57014337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3408 1 239 SBP-box Gene Family AT1G02065 47.222 4.28e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tpr5g3408 SBP 4.8e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g3408 5 57011474 57014337 Tpr5g3408 5 57011474 57014337 ECH