Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3351 ATGGCTTCCACATTTCTCACCATACCAACACCCTTCCTTCACAAAACCACCACAGCTTCTTTCTCCAACCGGAAACTCCCACTATTGAAGAGGAACTCTTTGAAGGTTAATGCAATTGCCAATAAATGGGAACCTACTAAGGTTGTGCCTCAGGCTGATAGGGTTCTTATTCGTTTGGAGGAGCTATCACAACAAACAGCTGGTGGAATTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATACCTTGTTGGAGAAGTCCTAAATGTTGGTGCTGAGGCTGAAAATGTGAAGGCCGGAGCAAAGGTTCTATTCAATGACGTAAATGCTTACGAGGTGGATTTGGGGACTGATGCAAAGCACGTCTTCATTAAATCAAGCGACTTATTGGCCGTGGTTGAGTAG 405 0.4469 MASTFLTIPTPFLHKTTTASFSNRKLPLLKRNSLKVNAIANKWEPTKVVPQADRVLIRLEELSQQTAGGILLPKSAVKFERYLVGEVLNVGAEAENVKAGAKVLFNDVNAYEVDLGTDAKHVFIKSSDLLAVVE* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3351 134 SUPERFAMILY GroES-like 47 134 IPR011032 -
Tpr5g3351 134 Pfam Chaperonin 10 Kd subunit 47 133 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tpr5g3351 134 CDD cpn10 47 133 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tpr5g3351 134 PANTHER 10 KDA CHAPERONIN 1, CHLOROPLASTIC-RELATED 16 133 - -
Tpr5g3351 134 PANTHER 10 KDA HEAT SHOCK PROTEIN 16 133 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tpr5g3351 134 SMART Cpn10_2 47 133 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tpr5g3351 134 PRINTS 10kDa chaperonin signature 48 63 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tpr5g3351 134 PRINTS 10kDa chaperonin signature 98 110 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tpr5g3351 134 PRINTS 10kDa chaperonin signature 120 133 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tpr5g3351 134 Gene3D GroES chaperonin 43 134 IPR037124 GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3351 Tpr-Chr5 56465491 56468716 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3351 15 134 Calmodulin-binding Proteins AT5G20720 28.030 1.92e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3351 K04078 - gmx:100306026 210.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g3351 5 56465491 56468716 Tpr5g3351 5 56465491 56468716 ECH