Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3333 ATGAGTAGAAGATGCCCTCCTGATTGTGAATTTGGCCAATATTTTCCAGCCAATAGGAATGAAGATTTTCAGAAAGCCATTAAGCTTTTTGGATTAAGTCACATATTGAGAATTATGAGATCAGTTGAGCCAAATGAAAGACAAGCTGCTGCTGATTCAATTCTCTTTGAAGGCAGTGTTTGGAGATTTTATCCACAAAGGGGACTGCTTAGATATGAGTTGGATTTGGTTAACACAATATCTTCAACTTTGAGAGAATTACAAATTGCCAATCAACTTTTGGCATTTTTTAAGGATCATGCAAATGAAAGGCCTGCCGGAGATATGAGTGGTATTTCAACTATTCGTGAAAAAGGAGAATCAAGTAATGCATCCAAGCAAAAGGAAGGTGTTGAAGATGGTGAAAAGGGAAAAGGAATTATTATTGAACAAGATGAATCAGAAGACAGTGATGAGGAGGAAGGCCCAAAGAAAAAATGCAGAATTTGA 489 0.3681 MSRRCPPDCEFGQYFPANRNEDFQKAIKLFGLSHILRIMRSVEPNERQAAADSILFEGSVWRFYPQRGLLRYELDLVNTISSTLRELQIANQLLAFFKDHANERPAGDMSGISTIREKGESSNASKQKEGVEDGEKGKGIIIEQDESEDSDEEEGPKKKCRI* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3333 162 ProSiteProfiles LOB domain profile. 1 94 IPR004883 -
Tpr5g3333 162 MobiDBLite consensus disorder prediction 107 162 - -
Tpr5g3333 162 MobiDBLite consensus disorder prediction 121 144 - -
Tpr5g3333 162 Pfam Lateral organ boundaries (LOB) domain 2 91 IPR004883 -
Tpr5g3333 162 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 147 - -
Tpr5g3333 162 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25-LIKE 2 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3333 Tpr-Chr5 56297146 56297923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3333 3 104 AS2 family AT3G13850 38.235 6.39e-17 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr5g3333 LOB 3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3333 - - mtr:MTR_8g009730 130.568