Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3296 ATGGAGAAAAAATTCATAGAACACAAAACTGTTACCAAAAAGCTTGTGAAACCTGGTTTCATGTCTTCTTCTTTCATACCAAAAACAATAAGAGTCACAGTTACTGATAATGATGCCACAGATTCTTCAAGTGAAGATGAAGGTTTCAAGAATGGTTTTGTTCAAATAACAAGAAAATCAGTGAAAGAGATTAGGTTTCAAGAATGTTCTACTCTTTCTAACAAGAACAACAAAAAGAAACCGGCGGTGTGTACTTCTGGTACCTCTTTGTACTCTGAAGAGACAAAAAACAAGAATGGTGTTGTTGGTGAATGTTGTTTGAAACAAGACAATAATAATAAGGATAAAGATATAAAGAATGTTGTTCATCAGAAGTTTCGCGGGGTTAGACGTCGGCCGTGGGGGAGATGGGCGGCCGAGATTCGGGATCCTCGTCTTCGAAGGAGAAAATGGTTAGGTACTTTTGATACTGCTGAAGAAGCTGCTTTGGTTTATGATAGAGCTGCAATTGATTATAGAGGTGCTGATGCTGTTACAAATATTATCAAACCACCACAAAAACATCATCAACAACAACAACAACAACAACAAAAGAAAACATTATCAAAGAATGTTTGTGACAAAAATGTTAATGTTGTTGATGTTAATGATTGTGTTGAGTCTGATACTAACAAAGAAGAATGTAATGGTAGTTCATCTTGTTCATCTGGTATTGAAATTTGGAGTGAAAAGATGAATGATCAAGAATGGATTAAAGAAATAAGTGGTGAGAAATATTTGGATTTGGATGATGGTTTTATGTTTGATGATTCATTTGGTTCTTATAATGAACCTGTTATTACTACAATGGTTTCTAATGAGAGTGAATGCATTATTGATAATATTCCTTTTCATCTTGAAGAAGATTTTGAATCATGTAAATGGGAAGTTGATAATTACTTCAATGATACTTTGTCAATGCATTGA 966 0.3385 MEKKFIEHKTVTKKLVKPGFMSSSFIPKTIRVTVTDNDATDSSSEDEGFKNGFVQITRKSVKEIRFQECSTLSNKNNKKKPAVCTSGTSLYSEETKNKNGVVGECCLKQDNNNKDKDIKNVVHQKFRGVRRRPWGRWAAEIRDPRLRRRKWLGTFDTAEEAALVYDRAAIDYRGADAVTNIIKPPQKHHQQQQQQQQKKTLSKNVCDKNVNVVDVNDCVESDTNKEECNGSSSCSSGIEIWSEKMNDQEWIKEISGEKYLDLDDGFMFDDSFGSYNEPVITTMVSNESECIIDNIPFHLEEDFESCKWEVDNYFNDTLSMH* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3296 321 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Tpr5g3296 321 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Tpr5g3296 321 Pfam AP2 domain 125 174 IPR001471 GO:0003700|GO:0006355
Tpr5g3296 321 ProSiteProfiles AP2/ERF domain profile. 125 182 IPR001471 GO:0003700|GO:0006355
Tpr5g3296 321 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 317 - -
Tpr5g3296 321 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 3 317 - -
Tpr5g3296 321 CDD AP2 124 180 IPR001471 GO:0003700|GO:0006355
Tpr5g3296 321 SUPERFAMILY DNA-binding domain 125 181 IPR016177 GO:0003677
Tpr5g3296 321 Gene3D AP2/ERF domain 124 182 IPR036955 GO:0003700|GO:0006355
Tpr5g3296 321 SMART rav1_2 125 190 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3296 Tpr-Chr5 55955123 55956088 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3296 4 207 AP2-EREBP Transcription Factor Family AT4G27950 37.981 1.27e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr5g3296 AP2 4.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3296 - - mtr:MTR_8g010340 322.013