Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3267 ATGAGTAGACGCTCCAGCAGAACCGTCTATGTTGGTAATCTACCTGGCGATATCCGTGAAAGAGAAGTTGAAGATTTGTTTATGAAGTATGGACACATAACTCACATTGACCTAAAGGTTCCACCAAGGCCTCCTGGTTATGCATTTGTAGAGTTTGAAGATTATCAAGATGCTGAGGATGCAATTCGCGGGCGTGATGGCTATGATTTTGATGGGCACCGGTTACGGGTGGAGGCTGCTCATGGTGGTCGTGGTACTGGTAATTCATCTTCAAGAGATCGATATAGTAGTCACACCAATGGCCGGGGTGGACGTGGAGTATCCAGACGTTTTGAATATCGCGTTCTAGTCAATGGGTTGCCCTCTTCTGCATCCTGGCAGGATCTTAAGGATCACATGCGAAAAGCAGGGGATGTTTGCTTTTCACAAGTTTTTCATGATGGAAGGGGTACGGGACATTCAGATGACTTTTTTCGCCAGGGTAAATCCTCACATCGTTCGCCAATGCATCAGAGCTTTTTGGAGCTTCTTGTTGTTATTGTTGCAGTTCTGGATCTTCTGATGCATGGAAAATATTTAAGTTTGAATATATACTAA 597 0.4439 MSRRSSRTVYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDYQDAEDAIRGRDGYDFDGHRLRVEAAHGGRGTGNSSSRDRYSSHTNGRGGRGVSRRFEYRVLVNGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTGHSDDFFRQGKSSHRSPMHQSFLELLVVIVAVLDLLMHGKYLSLNIY* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3267 198 SUPERFAMILY RNA-binding domain, RBD 5 147 IPR035979 GO:0003676
Tpr5g3267 198 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Tpr5g3267 198 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 155 IPR000504 GO:0003723
Tpr5g3267 198 PANTHER OS07G0673500 PROTEIN 2 151 - -
Tpr5g3267 198 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 151 - -
Tpr5g3267 198 CDD RRM1_SF2_plant_like 8 78 - -
Tpr5g3267 198 Gene3D - 113 177 IPR012677 -
Tpr5g3267 198 Gene3D - 1 112 IPR012677 -
Tpr5g3267 198 SMART rrm1_1 8 78 IPR000504 GO:0003723
Tpr5g3267 198 SMART rrm1_1 114 196 IPR000504 GO:0003723
Tpr5g3267 198 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Tpr5g3267 198 MobiDBLite consensus disorder prediction 79 106 - -
Tpr5g3267 198 MobiDBLite consensus disorder prediction 84 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3267 Tpr-Chr5 55623868 55627530 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3267 3 80 Eukaryotic Initiation Factors Gene Family AT3G11400 34.568 8.72e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3267 K12890 - gmx:100789847 292.737