Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3263 ATGCCTCCGAAGACGACGAAAAGAGGGGCGGCGGCCAGTGGTGCGAAGAGAGGTGGCAGAGCACCGAGAGGAACATCTAAGGCTGCACAGAATCAACAGCAGCAACCTGAACCTGTGGAGGAGAAATCGGTGATTGAGGAAGAACCTAAGGTAGAAGAAAATCCTGTTGTTGAGGAAAAACCTGTGGTGGAAGAGAATCCTGTTGAAAATAAAGCTATTGATATGAATGAAATTGCCCCTGAAGCTGCTGCAGAAGAAGCCAAAACGGTGAAAAAAGATGAAGAGGAGGTTAAGGAGTCAATAGATGAATATGAGAAAGATGAACGACTAGATTTGGAGGATCATGATCCTGAATATGAACCTGAAGAATATGGTGGGGTTGATTATGATGAGAAGGAAATTGAGCAGGAAGAGGGTCATGAGGTGGGGGATGAAGTTGAGGAAGAAGCTGAAGATAATGTTGGTGAAGAAGGTGATTCAGGTGAGGAAGAAGTAGAAGATGGTCATGATGAAATTGAGGGTGAAGAGGATGACGAGCATGCTGATGAGGAGCATGAGCATGCCGAGATGGCTGATGTGGAAGAAGAGGAACACCGTGAAGTTGTGAAGGAGAGGCGAAAGCGGAAAGAATTTGAAGTATTTGTTGGGGGCCTAGACAAAGATGCTACTGAAGATGATCTGAGGAAGGTTTTCGGTGAAGTTGGGGTTGTGACTGAGGTCAGGCTAATGATGAATCCTCAGACGAAAAAGAACAAGGGATTTGCATTCTTGCGGTTTGAAAATGTGGAACAAGCAAAACGAGCCGTAGAGGAGCTTAAAAATCCAGTGATTAATGGAAAACAATGTGGTGTTACTCCAAGTCAGGACAGTGATACCCTTTATTTGGGAAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAGAAGTTGAAGCATTATGGAGTTACAAATGTTGAGGATATAACTTTGGTAGAAGATTCTAATGATAAAGGAACAAACCGTGGGTTTGCATTCTTGGAATTTTCCTCTCGTTCAGATGCAATGGACGCCTTTAAGAGACTCCAGAAGAGGGATGTTGTGTTTGGAGTTGATAAGCCTGCAAAGGTTTCATTTGCAGATTCTTTTATTGATCCGGGTGATGAAATTATGTCACAGGTTAAAACTGTATTTATCGATGCACTTCCTCCTTCATGGGATGAAGATTATGTCAGGAGTCTTCTCAAGAAATATGGCGAAGTTGAAAAGATTGAGCTTGCCAGGAACATGCCAGCTGCTCGTAGGAAGGACTATGGATTTGTTACCTTTGGTTCACACGATGCTGCTATAAGATGTGCTGAGAGCATCACTGGTACAGAATTGGGTGAAGGTGACAAGAAGGCAAAAGTGAGGGCTAGATTATCAAGGCCTCTTCAGAGAGGCCGTGGAAAACATGTTGGTCGTGGGGACTACCGCCCTGGTCGTGGACCTGCAATAATGTCGAGGCCTTCTTGGAGCCGACCTGCACCCCGTAGTTTTTCTTCGCGAGGGGTAAGAGGAATCGGAAGTCGTGCTCTGCCGCCAGTCAGGCCTATTAGTGCTAGAGATAGACGCCCTGTCATGTCTGTACCAGTTAGAAGTAGGCCAGTACCTCCTCCAGCTAGATCTTATGATAGAAGACCAGCTGCTGCTGCATATTCAAAAAGTAGTGTGAAGAGAGACTATGGTCGGCGTGAGGATCTACCACCTCCAAGAAGTAGAGCTGCTGCAGATTATGGATCAAGGATGGCCTCTGAAAGACGCCCATCGTATAGGGATTATCCTCCCCGTGGATCTGACTACTCTGATCCCCCCAGAAGTACAGCTCGCGCTGCACCAAGGAGAGGTTATGTGGATGATGGTTACAGCCAAAGGTATGAGAGGCCTCCTCCTCCACCTGCTCCCCATTCAAGTTATCGTGAAGGGCGCCCTCGTGATTATGATGCTATTTCTGGCTCAAAACGTTCTTATGCTGCCATGGATGATGTTCCCCCGCGATACGCTGAATCTGGTGCTCGCCAATCAAGAGCTCGATTGGAATATGACTATGGTAGCAGTGCTTCACAGTATGGTGACACTTACGGTGATAGAGTTGGAAGATCTAGTCTTGGATATGGTAGTGGCAGCCGAAGTTCTATTTCTGGTCAAGATTCACATGGGATGTATAGCAGCCGGCAAGGGATGAGTTATGGTGGAAGCTCTTATGGTGGTAGTGACGCTGGAGGCATGTACTCATCAAGTTACGGTGGCGATTATGTTTCTCGTGGAAGTGATGTTGGCGGCAGCTCATATTCATCAATGTATTCTGGTAGGGGTGCGGGTGGCGGTAGCAGTTACATGGGCAGTGGTGGATCGGGGTCTTATTATTGA 2388 0.4648 MPPKTTKRGAAASGAKRGGRAPRGTSKAAQNQQQQPEPVEEKSVIEEEPKVEENPVVEEKPVVEENPVENKAIDMNEIAPEAAAEEAKTVKKDEEEVKESIDEYEKDERLDLEDHDPEYEPEEYGGVDYDEKEIEQEEGHEVGDEVEEEAEDNVGEEGDSGEEEVEDGHDEIEGEEDDEHADEEHEHAEMADVEEEEHREVVKERRKRKEFEVFVGGLDKDATEDDLRKVFGEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVEELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDKPAKVSFADSFIDPGDEIMSQVKTVFIDALPPSWDEDYVRSLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAIRCAESITGTELGEGDKKAKVRARLSRPLQRGRGKHVGRGDYRPGRGPAIMSRPSWSRPAPRSFSSRGVRGIGSRALPPVRPISARDRRPVMSVPVRSRPVPPPARSYDRRPAAAAYSKSSVKRDYGRREDLPPPRSRAAADYGSRMASERRPSYRDYPPRGSDYSDPPRSTARAAPRRGYVDDGYSQRYERPPPPPAPHSSYREGRPRDYDAISGSKRSYAAMDDVPPRYAESGARQSRARLEYDYGSSASQYGDTYGDRVGRSSLGYGSGSRSSISGQDSHGMYSSRQGMSYGGSSYGGSDAGGMYSSSYGGDYVSRGSDVGGSSYSSMYSGRGAGGGSSYMGSGGSGSYY* 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3263 795 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 795 - -
Tpr5g3263 795 MobiDBLite consensus disorder prediction 468 650 - -
Tpr5g3263 795 MobiDBLite consensus disorder prediction 564 578 - -
Tpr5g3263 795 MobiDBLite consensus disorder prediction 114 183 - -
Tpr5g3263 795 PANTHER RNA RECOGNITION MOTIF 1 795 - -
Tpr5g3263 795 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 281 IPR000504 GO:0003723
Tpr5g3263 795 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 359 IPR000504 GO:0003723
Tpr5g3263 795 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 390 455 IPR000504 GO:0003723
Tpr5g3263 795 Gene3D - 378 494 IPR012677 -
Tpr5g3263 795 SUPERFAMILY RNA-binding domain, RBD 290 455 IPR035979 GO:0003676
Tpr5g3263 795 MobiDBLite consensus disorder prediction 184 203 - -
Tpr5g3263 795 CDD RRM_SF 390 464 - -
Tpr5g3263 795 CDD RRM_SF 293 360 - -
Tpr5g3263 795 Coils Coil 87 110 - -
Tpr5g3263 795 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 388 470 IPR000504 GO:0003723
Tpr5g3263 795 CDD RRM_SF 213 284 - -
Tpr5g3263 795 MobiDBLite consensus disorder prediction 40 71 - -
Tpr5g3263 795 MobiDBLite consensus disorder prediction 25 39 - -
Tpr5g3263 795 Gene3D - 140 291 IPR012677 -
Tpr5g3263 795 MobiDBLite consensus disorder prediction 661 680 - -
Tpr5g3263 795 MobiDBLite consensus disorder prediction 84 113 - -
Tpr5g3263 795 MobiDBLite consensus disorder prediction 1 203 - -
Tpr5g3263 795 SUPERFAMILY RNA-binding domain, RBD 206 289 IPR035979 GO:0003676
Tpr5g3263 795 Gene3D - 292 374 IPR012677 -
Tpr5g3263 795 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 289 IPR000504 GO:0003723
Tpr5g3263 795 SMART rrm1_1 212 285 IPR000504 GO:0003723
Tpr5g3263 795 SMART rrm1_1 389 464 IPR000504 GO:0003723
Tpr5g3263 795 SMART rrm1_1 292 371 IPR000504 GO:0003723
Tpr5g3263 795 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 375 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3263 Tpr-Chr5 55560385 55565258 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3263 213 492 Eukaryotic Initiation Factors Gene Family AT4G34110 23.102 3.49e-16 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3263 - - aprc:113850151 875.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g3263 5 55560385 55565258 Tpr5g3263 5 55560385 55565258 ECH