Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3249 ATGGACGATTTGTGGGAAAATTGGATTTCTTCTTTGGAAATGGGTGGTGACAAATCTCTCTCTATGGATGATGACAAGTTTCTCATAGAGAATGTTCAAGAACCAACTTTCCCTTTTGAGAATGCAAATAATTCTCAATTTTCAACCATTGTTGATAATGTTTGTGTCACCACCACAATTCATGAGAAAATGCTCAATAATAGTAATAGTTCCAACTCTCTCATTTCTCAAGAATATTATGATGCTACTAATTCAAAACAATTAGAACCTTCTCAATTCATTTTGTCTTTTGAAAACACAACTGTGGAACCTTCTCCTAATAGTGCAACATTTTTATCTATCATGGATAACAATGTGAGTGAATTACCAAAGGTAAAACAAAGAACCAAGAATCATAGAAGCTCTTCTGAAATACAAGAACATATCATAGCTGAAAGAAAAAGGAGAAAAATTATTAGTGAGAGGTTCATAGCACTTGCTGCCATCATACCTGGATTGAAGAAGACAGATAAGGTCTACATACTTGGGGAAGCATTCAATTATGTAAAACAACTTCAAGAAAAAGTAAAAGAATTAGAGGATCATCAAAACAAAAGGAAAAATGATGATTCAATAATACTCATCAAGAAATATCAAGGTTGCACAATAGAGGAAAAAGGAAATTCTTGTGAAGAGAATAGTGATGAGCATAGATATTATTATTCCAAGCAAGAACTACCTAAGGTTGAAGCAAGAGTGATAGAGAAGGAAATTCTCATTGAAATCCATTGTGAGAAACAAAAGGATATTTTGGTAAAATTAATGGCATTGCTTCAAAATCTTCATCTATCACTTGCTAGTAGTAGCGTATTGCCATTTGGAACTTCCACTCTAAAAGTTACAATAGTTGCTCAGATGGATGATGATTTCTGCATGAGCATGGATGATCTAGTTAAAAACTTGAGGCAATATCTCTTGGAGTCACGTGACAAACAAAATAATATTTCTTAG 990 0.3313 MDDLWENWISSLEMGGDKSLSMDDDKFLIENVQEPTFPFENANNSQFSTIVDNVCVTTTIHEKMLNNSNSSNSLISQEYYDATNSKQLEPSQFILSFENTTVEPSPNSATFLSIMDNNVSELPKVKQRTKNHRSSSEIQEHIIAERKRRKIISERFIALAAIIPGLKKTDKVYILGEAFNYVKQLQEKVKELEDHQNKRKNDDSIILIKKYQGCTIEEKGNSCEENSDEHRYYYSKQELPKVEARVIEKEILIEIHCEKQKDILVKLMALLQNLHLSLASSSVLPFGTSTLKVTIVAQMDDDFCMSMDDLVKNLRQYLLESRDKQNNIS* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3249 329 Coils Coil 175 202 - -
Tpr5g3249 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 185 IPR011598 GO:0046983
Tpr5g3249 329 SMART finulus 142 191 IPR011598 GO:0046983
Tpr5g3249 329 Coils Coil 307 327 - -
Tpr5g3249 329 Pfam Helix-loop-helix DNA-binding domain 140 186 IPR011598 GO:0046983
Tpr5g3249 329 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 5 323 - -
Tpr5g3249 329 Gene3D - 135 205 IPR036638 GO:0046983
Tpr5g3249 329 PANTHER BHLH TRANSCRIPTION FACTOR 5 323 - -
Tpr5g3249 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 140 197 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3249 Tpr-Chr5 55400031 55404712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3249 133 318 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 43.915 2.25e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr5g3249 HLH 3.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3249 - - mtr:MTR_8g009020 412.149