Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3240 ATGGATACAAATACAGTTACAGTTACAGTTACACCACCGTCACCGTCATCGTTACAAAACATAAGCCCCAGCATTCTCATCATTGTAATCGTTCTCGCCGTCACTGTCATCGTTTCATTCGCAATCTGTTTTCTTCTCCGTCACCTCAACTGTAACTGCCTCCGCCGTCGTATCGCCGCCGATCCAACATCAACAACAACAACAACCGAATCATCACATCACAACAACCAAATCTCGCCGGAGATAATATCTCCTTCCGTTATCGATTCACTTCCTCTGTTTACATACTCTTCCATTTCTCGCCGCTCCTCCGCCGTCACCGCCGCTGACTGCGCCGTTTGTCTCTCGAAGTTCCGTAACAGTGACCTCCTCCGTTCTCTTCCACTATGTTGCCATGCATTTCACTCTGATTGTATTGACACGTGGCTTCGTTCAAATCTCTCATGTCCTCTATGTCGTTCCTCTGTTTTTCCTTCCGATTCCGACCTCGCGAAAATTCTCCGATCAAATTCCTCGGAGAGTTTCCGAGTTGAAATCGGAAACGTGAGCCGGCGAGGGACTAATTCAACTAATCCAGAACTCGCCGGTGGCGGTGACTCGAGGTCGTATTCTATTGGATCGTTTGATTATCATGTGGTTGAGCCATCGGAAGTTTCATTCACACAAGATCACCGGAGAAGTGTTTCCGATCAGAAGGAAATTCACATTCCGATTTCAGATGATTCTTCTGTAGTTACTATTGCCGGGGAAGTTTCTGGCAGTGGACATTGGTTGAAGGATTACGTGGACAGGCTTTCGGCTACTATTTCATCGCGAACGGCGTCGTTTCGAAGCTCTGGAAGGTTTTTCGGTGGTGGCGGAAGTAGTCGGAGAATTGAGCCGGTTGATTATGATGTGGAAGGTGGCAGAATTGGTGAAGAGATTAGTGAAATGTTTCGTTGGCTTTCAGGGGTATGA 957 0.4734 MDTNTVTVTVTPPSPSSLQNISPSILIIVIVLAVTVIVSFAICFLLRHLNCNCLRRRIAADPTSTTTTTESSHHNNQISPEIISPSVIDSLPLFTYSSISRRSSAVTAADCAVCLSKFRNSDLLRSLPLCCHAFHSDCIDTWLRSNLSCPLCRSSVFPSDSDLAKILRSNSSESFRVEIGNVSRRGTNSTNPELAGGGDSRSYSIGSFDYHVVEPSEVSFTQDHRRSVSDQKEIHIPISDDSSVVTIAGEVSGSGHWLKDYVDRLSATISSRTASFRSSGRFFGGGGSSRRIEPVDYDVEGGRIGEEISEMFRWLSGV* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3240 318 Pfam Ring finger domain 110 153 IPR001841 -
Tpr5g3240 318 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL4 11 303 - -
Tpr5g3240 318 SUPERFAMILY RING/U-box 87 159 - -
Tpr5g3240 318 SMART ring_2 111 152 IPR001841 -
Tpr5g3240 318 CDD RING-H2_PA-TM-RING 110 153 - -
Tpr5g3240 318 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Tpr5g3240 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 158 IPR013083 -
Tpr5g3240 318 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 11 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3240 Tpr-Chr5 55330290 55331628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3240 72 157 C3H Transcription Factor Family AT3G18930 47.312 2.06e-21 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3240 K10663 - gmx:100817751 312.383