Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3220 ATGAGTAGAAGATGCCCTCCTGATTGTGAATTTGGCCAATATTTTCCAGCCAATAGGAATGAAGATTTTCAGAAAGCCATTAAGCTTTTTGGATTAAGTCACATATTGAGAATTATGAGATCAGTTGAGCCAAATGAAAGACAAGCTGCTGCTGATTCAATTCTCTTTGAAGGCAGTGTTTGGAGATTTTATCCACAAAGTGGACTGCTTAGATATGAGTTGGAGTTGGTTAACACAATATCTTCATCTTTGAGAGAATTACAAATTGCCAATCAACTTTTGGCATTTTTTAAGAATCATGCAAATGAAAGGCCTGCCGGAGACATGAGTGGTATTTCAACTATTCGTGAAAAAGGAGAATCAAGTAATGCATCCAAGGGAAAGGAAGGTGTTGAAGATGGTGAAAAGGGAAAAGGAATTATTATTGAACAAGATGAATCAGAAGACAGTGATGAGGAGGAAGGCCCAAAGAAAAAATGCAGAATTTGA 489 0.3701 MSRRCPPDCEFGQYFPANRNEDFQKAIKLFGLSHILRIMRSVEPNERQAAADSILFEGSVWRFYPQSGLLRYELELVNTISSSLRELQIANQLLAFFKNHANERPAGDMSGISTIREKGESSNASKGKEGVEDGEKGKGIIIEQDESEDSDEEEGPKKKCRI* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3220 162 Pfam Lateral organ boundaries (LOB) domain 2 91 IPR004883 -
Tpr5g3220 162 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25-LIKE 2 150 - -
Tpr5g3220 162 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 150 - -
Tpr5g3220 162 MobiDBLite consensus disorder prediction 121 144 - -
Tpr5g3220 162 MobiDBLite consensus disorder prediction 115 162 - -
Tpr5g3220 162 ProSiteProfiles LOB domain profile. 1 94 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3220 Tpr-Chr5 55132360 55133138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3220 3 104 AS2 family AT3G13850 36.275 3.38e-16 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr5g3220 LOB 4.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3220 - - mtr:MTR_8g009730 126.331