Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3204 ATGGACAGAGAATGGGGTTCAAAACCGGGAAGCGGCGGAGCAGCGACGGCGCAAAACGAAGCAATAGACCGCCGTGAAAGACTCCGACGATTAGCATTAGAAACAATAGATCTAGCAAAAGATCCATATTTCATGCGAAATCATCTCGGTAGTTATGAATGCAAACTCTGTTTAACTCTTCATAACAACGAAGGTAATTACCTTGCTCATACACAAGGTAAACGTCATCAAACAAATCTCGCTAAACGTGCTGCTCGTGAAGCTAAAGATGCTCCTGCTCAACCTCAACCTCATAAGCGGAAACTTAATCTAAAGAAAACTGTTAAGATTGGGAGACCTGGGTATCGTGTGACTAAGCAATTTGATCCTGATACTAAACAAAGATCTCTTCTTTTTCAGATCGAATATCCTGAGATTGAAGACCTCGCAAAGCCCAGACATCGATTTATGTCCTCCTATGAGCAGAGGGTGCAGCCATTTGATAAAAGATACCAGTATCTCTTGTTTGCAGCTGAACCTTATGAAACAATTTCTTTCAAGGTACCAAGCACTGAGATTGATAAGTCTACTCCAAAGTTTTTCTCACATTGGGACCCAGATTCAAAGATGTTCACACTGCAGTTGTATTTTAAAACCAAACCCCCAGAGGCAACCAAACCGCAGCCGCCTACCTCTGCACCCAATGGCACCACCACAGCACCTGGTGTTCCACCAAGACCTATGCCCCCACCACCACAAGCTCCATTACCACCACCACCTCCTCCTCCACAAGGGCTACCTCCCGGCGCACCGATGGGAAATCCTCCTCGAGCACCTCCGCCTCCAATGTCAGGATCAATGCCACCACCACCTCCTATGGCTGCAAATGGTCCTCGGCCTATACCTTCTGGTGCAATGCCACCTCTCCCACCCCCAGCACCCCTTGGTGCTAGACCTCCATCAATGCCACCTCCTCCACAAGGTTTTCCAGGCCAACAAATGCAGAGCTAG 990 0.4778 MDREWGSKPGSGGAATAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKLNLKKTVKIGRPGYRVTKQFDPDTKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYETISFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKTKPPEATKPQPPTSAPNGTTTAPGVPPRPMPPPPQAPLPPPPPPPQGLPPGAPMGNPPRAPPPPMSGSMPPPPPMAANGPRPIPSGAMPPLPPPAPLGARPPSMPPPPQGFPGQQMQS* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3204 329 MobiDBLite consensus disorder prediction 233 323 - -
Tpr5g3204 329 Pfam Zinc-finger of C2H2 type 52 76 - -
Tpr5g3204 329 SUPERFAMILY beta-beta-alpha zinc fingers 48 82 IPR036236 -
Tpr5g3204 329 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Tpr5g3204 329 MobiDBLite consensus disorder prediction 1 21 - -
Tpr5g3204 329 Gene3D Classic Zinc Finger 46 89 - -
Tpr5g3204 329 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 318 - -
Tpr5g3204 329 MobiDBLite consensus disorder prediction 215 329 - -
Tpr5g3204 329 SMART CactinC_cactus_3 89 217 - -
Tpr5g3204 329 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Tpr5g3204 329 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Tpr5g3204 329 Gene3D - 93 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3204 Tpr-Chr5 55039358 55043295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3204 1 295 C2H2 Transcription Factor Family AT2G32600 72.881 4.53e-133 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3204 K12826 - sspl:121792200 444.506