Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3180 ATGGAGAAAAAATTCATAGAACACAAAACTGTTACCAAAAAGCTTGTGAAACCTGGTTTCATGTCTTCTTCTTTCATACCAAAAACAATAAGAGTCACTGTTACTGATAATGATGCCACTGATTCTTCAAGTGAAGATGAAGGTTTCAAGAATGGTTTTGTTCAAATAACAAGAAAATCAGTGAAAGAGATTAGGTTTCAAGAATGTTCTACTCTTGCTAACAAGAACAACAAAAAGAAACCGGCGGTGTGTACTTCTGGTACCTCTTTGTACGAGACAAAAAACAAGAATGGTGTTGTTGGTGAATGTTGTTTGAAACAAGACAATAATAATAAGGATAAAGATATAAAGAATGTTGTTCATCAGAAGTTTCGCGGGGTTAGACGTCGGCCGTGGGGGAGATGGGCGGCCGAGATTCGGGATCCTCGTCTTCGAAGGAGAAAATGGTTAGGTACTTTTGATACTGCTGAAGAAGCTGCTTTGGTTTATGATAGAGCTGCAATTGATTATAGAGGTGCTGATGCTGTTACAAATATTATCAAACCACCACAAAAACATCAACAACAACAACAACAACAACAACAGAAAACATTATCAAAGAATGTTTGTAACAAAAATGTTAATGTTGTTGATGTTAATGATTGTGTTGAGTCTGATACTAACAAAGAAGAATGTAATGGTAGTTCATCTTGTTCATCTGGTATTGAAATTTGGAGTGAAAAGATGAATGATCAAGAATGGATTAAAGAAATAAGTGGAGAGAAATATTTGGATTTGGATGATGGTTTTATGTTTGATGATTCATTTGGTTCTTATAATGAACCTGTTATTACTACAATGGTTTCTAATGAGAGTGAATGCATTATTGATAATATTCCTTTTCATCTTGAAGAAGATTTTGAATCATGTAAATGGGAAGTTGATAATTACTTCAATGATACTTTGTCAATGCATTGA 957 0.3396 MEKKFIEHKTVTKKLVKPGFMSSSFIPKTIRVTVTDNDATDSSSEDEGFKNGFVQITRKSVKEIRFQECSTLANKNNKKKPAVCTSGTSLYETKNKNGVVGECCLKQDNNNKDKDIKNVVHQKFRGVRRRPWGRWAAEIRDPRLRRRKWLGTFDTAEEAALVYDRAAIDYRGADAVTNIIKPPQKHQQQQQQQQQKTLSKNVCNKNVNVVDVNDCVESDTNKEECNGSSSCSSGIEIWSEKMNDQEWIKEISGEKYLDLDDGFMFDDSFGSYNEPVITTMVSNESECIIDNIPFHLEEDFESCKWEVDNYFNDTLSMH* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3180 318 Pfam AP2 domain 123 172 IPR001471 GO:0003700|GO:0006355
Tpr5g3180 318 CDD AP2 122 178 IPR001471 GO:0003700|GO:0006355
Tpr5g3180 318 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Tpr5g3180 318 PRINTS Ethylene responsive element binding protein signature 146 162 IPR001471 GO:0003700|GO:0006355
Tpr5g3180 318 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 3 314 - -
Tpr5g3180 318 SMART rav1_2 123 186 IPR001471 GO:0003700|GO:0006355
Tpr5g3180 318 ProSiteProfiles AP2/ERF domain profile. 123 180 IPR001471 GO:0003700|GO:0006355
Tpr5g3180 318 SUPERFAMILY DNA-binding domain 123 179 IPR016177 GO:0003677
Tpr5g3180 318 Gene3D AP2/ERF domain 122 180 IPR036955 GO:0003700|GO:0006355
Tpr5g3180 318 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3180 Tpr-Chr5 54771013 54772046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3180 4 203 AP2-EREBP Transcription Factor Family AT4G27950 39.024 9.36e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr5g3180 AP2 4.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3180 - - mtr:MTR_8g010340 321.627