Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3143 ATGGCTGAATTTGCTTCAAGCCTCATTCAAAGCTTGGGATCTGCTGCCTTACATGAATTTGCACGGATTAATGGTCTTAAGGATGAGTTGGAAAGGCTTAAGGAGCATGTTGAAACTTGTAAAGCTGTGCTGCTTGATCTTGACGGGAAACAAGAGCAAAGTCATGCTGAACAAAACTTAGTAACAAGGCTCAAAGATGTGCTTATTCCTGCAGATAACTTGCTAGATGAATTTGCTATTCAAGATATGATAAACAAAAGGGATCGAAACAAACTAAAAAAGGTACTTCATCCTTACTCTCTAAAAAAATTAGACATGGCTCATGAGATTGAAAAAATACAAAAAAAATTTGATGATGTGGAGAAATATATGTTTGGATTGAATCTAAACCTAAATGTTAGTGCGGTTGAGAAAACTAACAGTGAATGGAGGGAAACTGGTTCTTATGTGCCAGAATCAGAAATAATTGGAAGAGATGATGACAAAGAGAATATTATAAGCTTGTTGAGACAGTCACATGGAGATCCAAATGTCTCTTTCGTTGCTGTTGTTGGGATTGGTGGTATGGGAAAGACAACTCTTGCTCAGTTGGTGTATAGTGACGAAAAAGTGCAAAATTTGTTTGAAAAGAGTATGTGGGTATGTGTCTCTGATAACTTTGATGTCAAAACTATTTTGAAGAACATGTTGAAGTCATTATTACCTAAGGAAAAAATTGATGATACATTAACATTGGACAACTTGCAAAGTATGCTTCGTGACAATTTAAATGGTAAGAGATACTTGTTAGTCCTAGATGACATTTGGAATGAGAGTTCTGAAAAGTGGGATAAATTGAGGACTAACTTGATGTGCGGTGCTCGGGGTAGTAAGGTTGTAGTGACAACTCGAAGTACAATAGTGGCACATAGAATGGGTGTAAAGGATCCATATGTTTTGAGTGGTTTGATTCCAGAAAAATCTTGGAGTTTATTAAAGAAGATTGCATTTGGGGATGATACCATTCAAGTGGATCAAAAAATTGAATCAGTTGGTAAGGAGATAGCAGAAAAGTGCAAAGGAGTTCCATTAGCAATAAGATCATTGGGAAGTATATTAAAGGGTAAAAGTGAAGAAAAGGTATGGAATGATGTCTTACGAGGTGATTTTTGGAAATTGTGTGAGGATAAAGATAGCATATTGCCAGTTCTAAAATTGAGTTACAATAACTTATTGCCTCAACAAAGACAATGTTTTGCTTATTGCTCTTTGTTTCCTAAGGATTGGGAATTTGAGAAGGATGAGTTGGTTCAAATGTGGATGGCACATGGTTATCTTGATTGTCCAGTGGAAGGGAAATGCATTGAAGATGTTGGTAATCAATTCATTAATATTTTTTTGATGAAATCATTCTTCCAAGAACCAAAATGGAATGAAGATGGTGATTTAATTGGTTTTAAAATGCACGATTTAATGCATGATCTTGCAAAACAAGTAGCTGGTGATGATTGTTGTTACTTGGATAATAACACAAAAGGATTTCGAGGAAGACCTGTCCATGTATGGGTTGAATTTGACGCATTTTATTTGCTGGAATCTTTGGATGCTAGTAGGCTGCGAACTTTGATTGTGCTTTCTTCTAATGATGGTGATTTATTGGATAGAGAGAAACAATCACTTATTTCAAGGTTCAAATACTTGCGTGTCTTGAAGTTTTGCAATAATCATTATCTTGAGCTATATGTTTCAATTGAAAAATTGAATCATTTAAGATTTCTTAAATTCCCTTTGACTGCTTGTACACTAAAAAATCTTGTTTGTTTACAAACCATACAAGTGTGGTTGCATCCAAAAATTGTACTTTCTACAAAAGTTGTCTCAAAATTAATCAACTTGAGGTACCTTTATATTTGGAAATGGACCTTCACAGACAAGACACCAGTTGGATTTGGAAAATTGTGCATACCACAACATAAGGATGTAAATTTTTCCAAATGGCTTTCTCCTCTCACAAATATTATTGAAATATATCTTGGTTTTTGTCAAGGTTTCAAATATCTCCCACCTTTGGAAGGTCTTCCTTTCCTGAAGTCGCTTCACTTATGTAGACTTGATGATTTGGAGTACATATATTACGAATTGCCTATCCATGAGCCATTCTTCCCATCTTTGAATAAACTAAAGATCTGGTATTGTAGCAAACTGGTGGGATGGAAGAGGAAGGGAGATGATTTCAATGATATTAACACTACACATCATCTTTTCTTGCCTCAATTTCCTTGTCTATCTTTTCTGAGGATTTTTGAGTGCCCAATGTTGACTCACATGCCTACTTGTCCAAAAATTAAGAAATTATCATTGCAAGTGGACACATGGGAAGAAACGCCAAATATAGCATTGTCACAATGGTCGCTCAGTTGCACTCCTCTTTCCTTGCAAATTAATGTGGATTTGAAAAACGTCTCACAATATTGGTGGCAAAATCTTACTTCTCTCGAGAATCTTGAATTTGTGTGTTTTACCGATCAACAATTTCAAGCAATTGAAATCTGGTTGTTTAAGGAAGACTTCAACTATCTTCCTTCATTGCGAAATATTGAATTTTCCCACATAAAGGCATTGCCAGATTGGATATGCAAAATCTCATCACTTCAGCATATCAAGATAAATCATTGCTATAAATTGACATTACTACCTGAAGGAATGACACATCTTACTAACTTACATACCTTGGAAATCATTAGTTGTCCACTCTTAATTGAAGAATATCAGAAAGAAACAAGTGCAACTCGGCCTACAATTGCACACATCCCAAACATAATCATAAAAAATGATTGGAATTAG 2823 0.3518 MAEFASSLIQSLGSAALHEFARINGLKDELERLKEHVETCKAVLLDLDGKQEQSHAEQNLVTRLKDVLIPADNLLDEFAIQDMINKRDRNKLKKVLHPYSLKKLDMAHEIEKIQKKFDDVEKYMFGLNLNLNVSAVEKTNSEWRETGSYVPESEIIGRDDDKENIISLLRQSHGDPNVSFVAVVGIGGMGKTTLAQLVYSDEKVQNLFEKSMWVCVSDNFDVKTILKNMLKSLLPKEKIDDTLTLDNLQSMLRDNLNGKRYLLVLDDIWNESSEKWDKLRTNLMCGARGSKVVVTTRSTIVAHRMGVKDPYVLSGLIPEKSWSLLKKIAFGDDTIQVDQKIESVGKEIAEKCKGVPLAIRSLGSILKGKSEEKVWNDVLRGDFWKLCEDKDSILPVLKLSYNNLLPQQRQCFAYCSLFPKDWEFEKDELVQMWMAHGYLDCPVEGKCIEDVGNQFINIFLMKSFFQEPKWNEDGDLIGFKMHDLMHDLAKQVAGDDCCYLDNNTKGFRGRPVHVWVEFDAFYLLESLDASRLRTLIVLSSNDGDLLDREKQSLISRFKYLRVLKFCNNHYLELYVSIEKLNHLRFLKFPLTACTLKNLVCLQTIQVWLHPKIVLSTKVVSKLINLRYLYIWKWTFTDKTPVGFGKLCIPQHKDVNFSKWLSPLTNIIEIYLGFCQGFKYLPPLEGLPFLKSLHLCRLDDLEYIYYELPIHEPFFPSLNKLKIWYCSKLVGWKRKGDDFNDINTTHHLFLPQFPCLSFLRIFECPMLTHMPTCPKIKKLSLQVDTWEETPNIALSQWSLSCTPLSLQINVDLKNVSQYWWQNLTSLENLEFVCFTDQQFQAIEIWLFKEDFNYLPSLRNIEFSHIKALPDWICKISSLQHIKINHCYKLTLLPEGMTHLTNLHTLEIISCPLLIEEYQKETSATRPTIAHIPNIIIKNDWN* 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3143 940 Pfam NB-ARC domain 159 403 IPR002182 GO:0043531
Tpr5g3143 940 CDD RX-CC_like 4 120 IPR038005 -
Tpr5g3143 940 Gene3D - 401 492 IPR036388 -
Tpr5g3143 940 SUPERFAMILY L domain-like 465 830 - -
Tpr5g3143 940 PANTHER DISEASE RESISTANCE PROTEIN RP 31 630 IPR044974 GO:0006952
Tpr5g3143 940 Gene3D - 138 309 IPR027417 -
Tpr5g3143 940 Gene3D Ribonuclease Inhibitor 781 926 IPR032675 -
Tpr5g3143 940 Gene3D Ribonuclease Inhibitor 523 780 IPR032675 -
Tpr5g3143 940 PANTHER OS05G0414200 PROTEIN 31 630 - -
Tpr5g3143 940 Coils Coil 23 43 - -
Tpr5g3143 940 Gene3D - 316 400 IPR042197 -
Tpr5g3143 940 Pfam Rx N-terminal domain 5 88 IPR041118 -
Tpr5g3143 940 PRINTS Disease resistance protein signature 180 195 - -
Tpr5g3143 940 PRINTS Disease resistance protein signature 255 269 - -
Tpr5g3143 940 PRINTS Disease resistance protein signature 352 366 - -
Tpr5g3143 940 PRINTS Disease resistance protein signature 896 912 - -
Tpr5g3143 940 SUPERFAMILY L domain-like 808 911 - -
Tpr5g3143 940 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 415 IPR027417 -
Tpr5g3143 940 Gene3D - 5 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3143 Tpr-Chr5 54231209 54235182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3143 177 457 WRKY Transcription Factor Family AT5G45050 25.987 4.26e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3143 - - mtr:MTR_8g027540 1133.24