LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr5g3140	ATGGCTTCCTCTCTATTTCACTTTCTGCTATACTCACTGATTCTTCAATCCATCATCAGTGTTGTAGCTCAAAACAAAAGTACTATAGCCATTGGTGATTCTTTTACAGCACAAACTAACAACTCTCAATGGTTGCTTTCACCTTCTGGTGAATTTGCCTTTGGTTTTCTTCCACTTGAAGGCACTGATCTTTTTTTGCTTTCCATTTGGTATGCCAAAATTTCTGACAAAACTGTTGTGTGGTATGCTAATAGAGACAGTCCTGCACCAAAAGGTTCAAAAGTGGAACTCAATGCCAATGATGGCTTGGTGATAACTTCTCCAAATGGTGACAGTTTGTGGAATACTGAAGGACTCAACGCTAAAGTTTCTAACGGTGTGTTCAATGATACCGGCAACTTTGTGCTTAAGGGTGAAAAACTCAACAGTGTTTGGGAGACTTTCCAGTCTCCTAGTGACACCTTCTTGCCTACTCAGACTCTCCAAAAGGGTGGAAAACTTTCTTCAAGGCTTAAGGAGACAAATTTCAGTAAAGGAAGGTTTGAGCTTCTTTTACAAGATGATGGTAATCTTGTTATGCATTCTATTAATTTACCATCTGGTTATGCCAATGAAAACTACTATGAAAGTGGAACTGTTGGTTCCAATACATCAAGTGCTGGAACTCAATTGGTCTTTGACAGATCAGGGTACTTGTATGTCAAGGGAGAGAACAATGAGAAATACAATGTGTCAGAAGGAGTGAATAAAGTCTCTACCACTGATTTTTACCTTAGAGCAACTCTTACTTTTGATGGAGTGTTCACACTTTACAAGCATCCAAAGAGTTCAACTCAGAGTGAAGGCTGGACCATAGTATGGTCTAAACCTGATAATATATGTAATCATGTTGATAATGAAGGGAGTGGTGTTTGTGGATATAATAGCTTCTGCACTTTGGGAGATGATAAGAGACCAATATGTCAGTGTCCACAACGCTACGTACTGGTTGATCCTGATGATCCAAATGGTAGCTGCAAGCCAGACTTCATACAAGGATGTGCAGAAGATGAACTAAGTAAAAACAGAAATGATCTCTATGACTTTAAGATTTTGATTGACACCGATTGGCCTATGGCAGATTCTGTGCTTCAAAGGCCTTTTACTGAAGAAGCATGTAAGAAATCTTGCATGGAAGATTGCTTTTGTTCTGTGGCTATTTTCAGGTTAGGTGATAGTTGTTGGAAGAAGAAGTTACCACTCTCAAACGGGAAAGTTGATAAAACTCTTAATGGTGCTAAGGCCTTCTTGAAAGTGAGAAAAGATAATATATCCCTTGCTGGTGTTCCTCAAAATCCAACCAATGTGACAAAGAATAATAATAGGGAAACTTTGGTTTTGGTTCTTTCTGTGCTTTTTGGTAGCTCTGCTATTCTAAATGTTGTATTCATTGTCGCAATATGTGTCAGCGCCTCCTTCATTTTTCAGTACAAAAAGAAGCTTAGAAGAGTTAGCAAGAATGACACTTCTGTTGAAATTCAATCCAATTTGCGTTGTTTCACTTATAAAGAACTTGAAGAAGCTACCAATGGGTTTTACAAAGAGCTTGGAAGGGGAGCTTTCGGTATTGTTTATGAAGGAGTCATCAACACAGGTTCCAGAACTCGTGTGGCAGTGAAGAAGTTGAACAATTTTTTGCTGGATCAAGCTCATAGGGAATTCAGGAATGAACTGAATGTCATTGGTCTCACTCATCACAAGAACTTGGTTCGTTTACTTGGATTTTGTGAGGGTGGAAGTGAAAGATTGCTTGTTTATGAGTTCATGAGCAATGGCACTTTGGCAAGTTTTCTTTTCAACGATGAGATATTGAAACCTAGTTGGAAACTAAGGCTAGAACTTGCAATAGGAATAGCTAGAGGACTTGTGTATTTACATGAAGAGTGCATCACTAGGATCATCCATTGTGACATAAAGCCTCAAAACATACTCCTTGATGATTACTTTAATGCAAGAATTTCTGACTTTGGATTAGCCAAATTGTTGAACATGAATCAAAGCAAAACCAACACTGGCATAAGGGGAACAAAAGGGTATGTTGCACTTGAATGGTTTAAAAACTCGCCTATCACAGCTAAGGTTGATGTGTATAGTTTTGGTGTAGTGCTACTTGAGATAATTTCATGTAGAAGATGTGTTGAAGAAATGGAGCAAGAAGATGAAGAGCAGGCTATCTTAACTGATTGGGCTTATGATTGCTACAAAGATGGTGCTGTAGATGCATTGGTTGAGGGTGACATTGAGGCATTGGCGGACAAGGAAAAGTTGGAGAAATTGGTAATGATTGCTATTTGGTGTGTTCAAGAGGATCCATACCTTAGACCAACCATGAGAAATGTGATACATATGCTTGAAGGTACTGTTGAAGTGCCAGTTCCACCATACCCTCACAAATTAGTGTTCAATATTCTATAA	2454	0.3871	MASSLFHFLLYSLILQSIISVVAQNKSTIAIGDSFTAQTNNSQWLLSPSGEFAFGFLPLEGTDLFLLSIWYAKISDKTVVWYANRDSPAPKGSKVELNANDGLVITSPNGDSLWNTEGLNAKVSNGVFNDTGNFVLKGEKLNSVWETFQSPSDTFLPTQTLQKGGKLSSRLKETNFSKGRFELLLQDDGNLVMHSINLPSGYANENYYESGTVGSNTSSAGTQLVFDRSGYLYVKGENNEKYNVSEGVNKVSTTDFYLRATLTFDGVFTLYKHPKSSTQSEGWTIVWSKPDNICNHVDNEGSGVCGYNSFCTLGDDKRPICQCPQRYVLVDPDDPNGSCKPDFIQGCAEDELSKNRNDLYDFKILIDTDWPMADSVLQRPFTEEACKKSCMEDCFCSVAIFRLGDSCWKKKLPLSNGKVDKTLNGAKAFLKVRKDNISLAGVPQNPTNVTKNNNRETLVLVLSVLFGSSAILNVVFIVAICVSASFIFQYKKKLRRVSKNDTSVEIQSNLRCFTYKELEEATNGFYKELGRGAFGIVYEGVINTGSRTRVAVKKLNNFLLDQAHREFRNELNVIGLTHHKNLVRLLGFCEGGSERLLVYEFMSNGTLASFLFNDEILKPSWKLRLELAIGIARGLVYLHEECITRIIHCDIKPQNILLDDYFNARISDFGLAKLLNMNQSKTNTGIRGTKGYVALEWFKNSPITAKVDVYSFGVVLLEIISCRRCVEEMEQEDEEQAILTDWAYDCYKDGAVDALVEGDIEALADKEKLEKLVMIAIWCVQEDPYLRPTMRNVIHMLEGTVEVPVPPYPHKLVFNIL*	818

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr5g3140	817	Gene3D	-	151	282	IPR036426	-
	Tpr5g3140	817	Pfam	Protein tyrosine and serine/threonine kinase	525	797	IPR001245	GO:0004672\|GO:0006468
	Tpr5g3140	817	Gene3D	-	20	150	IPR036426	-
	Tpr5g3140	817	SUPERFAMILY	alpha-D-mannose-specific plant lectins	65	212	IPR036426	-
	Tpr5g3140	817	CDD	STKc_IRAK	529	799	-	-
	Tpr5g3140	817	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	7	811	-	-
	Tpr5g3140	817	SUPERFAMILY	Protein kinase-like (PK-like)	500	810	IPR011009	-
	Tpr5g3140	817	SMART	blect_4	36	151	IPR001480	-
	Tpr5g3140	817	Gene3D	Transferase(Phosphotransferase) domain 1	602	803	-	-
	Tpr5g3140	817	ProSiteProfiles	Protein kinase domain profile.	523	813	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr5g3140	817	Pfam	D-mannose binding lectin	78	162	IPR001480	-
	Tpr5g3140	817	PIRSF	SRK	1	816	IPR024171	GO:0004674
	Tpr5g3140	817	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1	7	811	-	-
	Tpr5g3140	817	ProSitePatterns	Protein kinases ATP-binding region signature.	529	554	IPR017441	GO:0005524
	Tpr5g3140	817	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	646	658	IPR008271	GO:0004672\|GO:0006468
	Tpr5g3140	817	CDD	B_lectin	40	151	IPR001480	-
	Tpr5g3140	817	SMART	serkin_6	523	797	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr5g3140	817	ProSiteProfiles	Bulb-type lectin domain profile.	31	149	IPR001480	-
	Tpr5g3140	817	Gene3D	Phosphorylase Kinase; domain 1	485	601	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr5g3140	Tpr-Chr5	54199912	54202619	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr5g3140	509	813	Receptor kinase-like Gene Family	AT1G60800	39.752	2.48e-71	243

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Tpr5g3140		PK_Tyr_Ser-Thr	1.6e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr5g3140	-		-	mtr:MTR_8g011410	1321.61