Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3119 ATGGCTGATGTTACCTATCTCCGTCACCACCACGAACCCGACGATGATCAAACCCTAATCCCTTTACCCTATTGGTCTTCTTCCCCTTCCGATTTCGATTTCGATTTTGATTTATACTCTTCCGATCCCGAATTCCCTCCCAATCACCACCACCACAACCACTTTTCTCGTGAAACTTTCGTCATGGATCTATTCCAACAACGCGTGGAACAATCTCATGTCATCGATCATACCGATCCTATACATCAATCGATAAACGACTCTGTTTTCGATAGTTTAAGTCTTGATTTAGGTTTCAATACTTCCGATTTCAATTTCGGTATCCATAACAACGTCGATGATGATGATGACGACGAAGACGATGATTTTCCTGATACGAGGGTTTCTGGATCAGATCCGATCAACGGTTTGCGTATTGTTGAAATTGATTCGGATTCCGATTGTGAAGAAGATGTTGAAGGAAATAATGTGTTTTATGGGATCTGTGTACATTCTGATGAAGAAGATTTTAATAACGTAATTGATGAAGTTGCGAATTTTCCTCTCCGTTGGGATTCACTTCAGTTGGAGGATAATCAAATATATGAAGATTTTGAGTGGGAGGAAGTTGATGGTGGTTTAGATGAGAGGGATTTTCTTAATAACATGGTTCCCATTCACGGTGGTTTAGATGAGAGGGATGTTATGGTTCCCATTGACGACAATAATAGGTCGGTTAATTCCGGTTCAGGTCGCGCTATTCCGTTTATTGTAGAAGAAGAAGAACAAGATCTAGAAGAGGTTAACATGATGATGAGGGTTGGTGGAGGAATGGAAAATCTTGAGTGGCAAGTATTGTTGAATTCGGATTCTGATAATATAGGCACAAGCCCTGAAACTTATCATGTAATTGCAGAGCCTTTTGGGGAGAATGATGATTACTTTTACACTGCAGAGTATGAGATGATGATTGCTCAATTCACAGATAATGATAACCCGTTAACCGGTAGGCCTCCGGCTTCTGTATCCGTCGTTCAGAACCTTCCTAATGAGGTTGTGACCAAAGATGATGTGGAGAATAACAATGCGCTATGTGCCGTTTGTAAAGATGAATTTTCTGTTGGAGAAGAGGTGAAGTTGTTGCCGTGTTCTCATCGTTACCATGGTGATTGTATTGTGCCTTGGCTGGGGATTAGGAATACTTGTCCCGTTTGTCGATATGAGTTCCCCACTGATGATGCTGATTATGAACGTAGGAAAGCCCCAATGTTGGCCCGGAGCGCTTGA 1266 0.4171 MADVTYLRHHHEPDDDQTLIPLPYWSSSPSDFDFDFDLYSSDPEFPPNHHHHNHFSRETFVMDLFQQRVEQSHVIDHTDPIHQSINDSVFDSLSLDLGFNTSDFNFGIHNNVDDDDDDEDDDFPDTRVSGSDPINGLRIVEIDSDSDCEEDVEGNNVFYGICVHSDEEDFNNVIDEVANFPLRWDSLQLEDNQIYEDFEWEEVDGGLDERDFLNNMVPIHGGLDERDVMVPIDDNNRSVNSGSGRAIPFIVEEEEQDLEEVNMMMRVGGGMENLEWQVLLNSDSDNIGTSPETYHVIAEPFGENDDYFYTAEYEMMIAQFTDNDNPLTGRPPASVSVVQNLPNEVVTKDDVENNNALCAVCKDEFSVGEEVKLLPCSHRYHGDCIVPWLGIRNTCPVCRYEFPTDDADYERRKAPMLARSA* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3119 421 CDD RING-H2_RNF126_like 358 399 - -
Tpr5g3119 421 SUPERFAMILY RING/U-box 344 405 - -
Tpr5g3119 421 ProSiteProfiles Zinc finger RING-type profile. 358 399 IPR001841 -
Tpr5g3119 421 SMART ring_2 358 398 IPR001841 -
Tpr5g3119 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 405 IPR013083 -
Tpr5g3119 421 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 297 414 - -
Tpr5g3119 421 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 297 414 - -
Tpr5g3119 421 Pfam Ring finger domain 358 399 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3119 Tpr-Chr5 53998116 53999798 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3119 17 405 C3H Transcription Factor Family AT5G60820 34.884 1.88e-47 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3119 - - mtr:MTR_4g110100 550.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g3119 5 53998116 53999798 Tpr5g3119 5 53998116 53999798 ECH