Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3118 ATGTCGACTCCATTAGCTACCTCCAAGAAACGCCCAAAATCCCAAGAGAAAGATGAAGAAAACAATGATGATTGCTGCGGAATTTGCTACATGGAACGTGGAGTTCCAATCCCGGGGAAAATTGATTCATGCAACCACTATTTCTGCTTCGTTTGCATCATGGAATGGGCGAAACACGAATCTCGATGTCCAATTTGTCGCCAGAGATTCTCAAACGTTCGTAGACTCCCTAAAGATGGCGTTTTTTGTTACCATCGGGATATTAAGGTCCCTATTCGTGACCAGGTTTATCATCCTCATGGAAATATGACAACTGGTCCTGTCAATTCTAATGCTGAACTCAAATGCAGTATTTGCAATGTTGTGAAAGATGACAATCTTATAATAATATGTGATCTTTGTGACACTGCTTCCCATACATATTGTGTTGGCTTGGGCTACACCGTTCCTGAAGGTGATTGGTTTTGTTTTGATTGTGCTGCTGCTGCCCGGGAGACTAATGCTAATGATGGGTTAGACCAACAAAATGTTAAGCTAATGGCTGAGCCTGATGTAGTCATCTTAGATAATGTGAGAGGAACAAGCAGCCAAGTATTCAGAGGACCAATGGCATCTCCTATACAACAAAACAATTATCCGTCTTCTAGTATTCCTTTATTTGATAGAGTGAGTAGACCTGAAGGTAAAAAACCTATGTCGGACGTCCAGCGTGCGCAACATAAGATTCAGGTGCTTCGTGAAAATTGGAATTCTTTAAGAAGTGGTAAATTAAGTTTCCATAGCAATTCATTTCAATCTGGTGGCACAAGTAGTCAAAAAGAAGGTTCTAGTTCTTTATCACATGGCAAATTAGATGACTCACATTCAATGGCTTCCAAAGGCCATCCACAATCCACAGTCCAAGGTGCTCAATCTAGTAGTGCCTTGGAAGACGATGTTCGCAAAGCTTGGAAAATGTGGGATAGGGTAAAGGTGACAAAACAGACTCCTAGAAGAACTAGCAGCATTCCACAGGGAGTGGCTAATGATCCTCCATGTAGTGGTGCTAGAGAAAAATCATTCGCACCTCGTAGTTTCCCAGAGTTGAAAAACCAACAGCCCATAACATCAGACTTTAGGCACATCAGAATGGAGGAGCAGCGTGACTATTCTAGTCTCCAAAAAAAATTGGAAAATCACCGGTCTCCAATATTGGGAGAGAAAAGGCAAAGTAGGGTCACATGTGACGAGATGCTACAACACGTGAGGAACAATACTACTCATTCAGAAGGATACAGGCAACATCCATTGCCTGGAAAGGCCCATACTATTACCCACGGTGCTCCTTGTCACGAAGAAAGAAATGTTGCAAAGGAACAAAGACAGGCTGCTAACTTGGTAACTTCAGTAGGATCAGCACCCTCGAGTTGCCAATCTGGCCGTGTCTTCACCTCTAATAAGGATATGGGTATTTTCAATAAAGAAAAGACGTTGGCCAAAAGCTTTGGGAATGGGATCACGAAAAATTTTGAGGATTCAAAAACAGAGATCCAGTCTCTTGTTAAACTGAATCTGAAGTGGTTAACTAGAGATAAACAATTAGGTGTTGAAACCTTCAAGGTAGTTGCAAGGCAAGCCACCCATACCATCTTGGCTGCTTGCAATTCCAAGTACATCTCAAACTCAGTATGCAGCCACACTGACAATATTCTACAGATTCAGAATCCGAAGTCAAGTTTAATGTCCAAATGTTGCCAACAATGCTTTAATGCCTTTGTAAATGATGTTGTCAAGTCCATCATGTTGGAAAACATGGGTTGTTCTTGA 1806 0.4175 MSTPLATSKKRPKSQEKDEENNDDCCGICYMERGVPIPGKIDSCNHYFCFVCIMEWAKHESRCPICRQRFSNVRRLPKDGVFCYHRDIKVPIRDQVYHPHGNMTTGPVNSNAELKCSICNVVKDDNLIIICDLCDTASHTYCVGLGYTVPEGDWFCFDCAAAARETNANDGLDQQNVKLMAEPDVVILDNVRGTSSQVFRGPMASPIQQNNYPSSSIPLFDRVSRPEGKKPMSDVQRAQHKIQVLRENWNSLRSGKLSFHSNSFQSGGTSSQKEGSSSLSHGKLDDSHSMASKGHPQSTVQGAQSSSALEDDVRKAWKMWDRVKVTKQTPRRTSSIPQGVANDPPCSGAREKSFAPRSFPELKNQQPITSDFRHIRMEEQRDYSSLQKKLENHRSPILGEKRQSRVTCDEMLQHVRNNTTHSEGYRQHPLPGKAHTITHGAPCHEERNVAKEQRQAANLVTSVGSAPSSCQSGRVFTSNKDMGIFNKEKTLAKSFGNGITKNFEDSKTEIQSLVKLNLKWLTRDKQLGVETFKVVARQATHTILAACNSKYISNSVCSHTDNILQIQNPKSSLMSKCCQQCFNAFVNDVVKSIMLENMGCS* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3118 601 Pfam PHD-finger 116 160 IPR019787 -
Tpr5g3118 601 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 76 IPR013083 -
Tpr5g3118 601 SMART ring_2 26 66 IPR001841 -
Tpr5g3118 601 PANTHER F18C1.6 PROTEIN 9 598 - -
Tpr5g3118 601 SUPERFAMILY RING/U-box 15 82 - -
Tpr5g3118 601 MobiDBLite consensus disorder prediction 261 311 - -
Tpr5g3118 601 PANTHER 2X PHD DOMAIN CONTAINING PROTEIN-LIKE 9 598 - -
Tpr5g3118 601 SUPERFAMILY FYVE/PHD zinc finger 110 161 IPR011011 -
Tpr5g3118 601 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
Tpr5g3118 601 MobiDBLite consensus disorder prediction 261 308 - -
Tpr5g3118 601 Pfam Ring finger domain 25 67 IPR001841 -
Tpr5g3118 601 SMART PHD_3 115 160 IPR001965 -
Tpr5g3118 601 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 172 IPR013083 -
Tpr5g3118 601 MobiDBLite consensus disorder prediction 324 357 - -
Tpr5g3118 601 ProSiteProfiles Zinc finger PHD-type profile. 113 162 IPR019787 -
Tpr5g3118 601 ProSiteProfiles Zinc finger RING-type profile. 26 67 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3118 Tpr-Chr5 53992265 53995687 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3118 68 164 C2H2 Transcription Factor Family AT3G01460 31.633 3.20e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr5g3118 PHD 1e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3118 - - gmx:100808541 631.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g3118 5 53992265 53995687 Tpr5g3118 5 53992265 53995687 ECH