Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3117 ATGGAGCTTCCTCAATCACGTCCTTGTGGAGCCGAAGGGAGGAAATCGACGCATGATTTTCTGTCGCTATACAGTAATCAAACTGGAGAACAAGATCCAAGGCCATCTGCTCAAGCTAGTTACCTCAAGACCCATGATTTCTTGCGGCCACTAGAACAAGTAGAAACGAAATCCGATACCAAGGAAGAAGCCACCGATGAAATCTCATCTGTGGTTCAGAATCAACCGCCTTTAGCAACACCAGCTTCAGTTGAGCACATCTTACCTGGAGGAATTGGGACTTACAGTATCAGCCACATTAATTCCTACGTCAATAATAATCAAAGGATTCCAAAGCCAGAAGCATCACTTTTCACAGTGCATCAAGCAACCAGTGCAGATAGAAACGATGACAACTCCAACTGCAGTTCACATACGTCAAGCGGTTTCACATTGTGGGAAGAGTCTGACATTAAAAAGGGAAAGACAGGGAAAGAGAATAATGTTGGCGAGAAGCCCATTATAGGAGATTCTGCTGCTAAGCTGGGGCAGTGGACATTGACGGAGCGAACATCTCAATCGTTTTCTAACAATCTCCATGGCAGCTTCAACTCTCGCTCTTCATCTCAGACAACTGGACAGAAAAACCAGAGTTTTATGGAAATGATGAAATCTGCACAGGATTGTGCCCAGGATGAAGTGCTAGAAAATGAAGGAACCTTTTTTCTCAAGAGAGAATCCTCCAATAATACTCAAAGAGGAGAACTAAGGGTGAGAGTGGATGGGAAGAGTACTGATCAAAAGCCAAACACACCGAGATCAAAACATTCTGCAACAGAGCAGAGGAGAAGAAGCAAAATTAATGACAGGTTTCAGATGCTACGAGAGCTTATTCCACACAGTGATCAAAAGAGGGACAAAGCATCTTTTTTGTTAGAGGTTATTGAGTACATTCACTTTTTACAAGAGAAGGTGCATAAGTATGAAGGTTCATTCCAAAGTTGGAATAACGAGCCAGAAAAATTGATGCCATGGAGAAATAATGACAGGCCAGCAGAGAGTTTTCAACCTCGTGGCACAAACAGTGGGCCTAATCCATCTCCAACATTGCTGTTTGCTTCAAAGATTGATGAGAAAAATACCACCATCTCCCCAACAATACATGGAGGCCCCCATAATCTAGAATCTGGCTTGAGTACACCACCAACTGCCTTCAAGACAATGGATCATCAGTCTGGAATAATGAATAAGGCTCTTCCAAATCTTATTTCTTCCCAGCCAAATTTCTTCGCTTCATCCCAAATCGGTGGTTCAGGTGGAGCAGTGTCTCAACTCAGACATAGATTAGCATCTGATGCAGAAAACACAATTTATCAACCTTCAGTAGAAACTCAAGCTATGACTTCAACCAGTGAAAAACTGAAAGAGAAAGAGCTCACTATTGAAGGAGGTGCCATTAGCATATCAAGTGTGTACTCGAAAGGGTTGTTGGATACACTTACACAAGCCTTGCAGAGTTCAGGAGTGGATTTGTCACAAGCTAACATTTCAGTGCAAATTGAGCTTGGTAAGCAAGCAAACATCAGACCAAACGTACCGATGTCAATGTGTGTTACTAAGGATGATGAAGATCCTTCTAAGAATCAAAGGAAGATACGCTCTAGAGTCTCTGGCTCTGAGAAATCTGACCAAGCATTAAAGAAACTAAAGACATGCAGAAGTTAA 1704 0.4237 MELPQSRPCGAEGRKSTHDFLSLYSNQTGEQDPRPSAQASYLKTHDFLRPLEQVETKSDTKEEATDEISSVVQNQPPLATPASVEHILPGGIGTYSISHINSYVNNNQRIPKPEASLFTVHQATSADRNDDNSNCSSHTSSGFTLWEESDIKKGKTGKENNVGEKPIIGDSAAKLGQWTLTERTSQSFSNNLHGSFNSRSSSQTTGQKNQSFMEMMKSAQDCAQDEVLENEGTFFLKRESSNNTQRGELRVRVDGKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQSWNNEPEKLMPWRNNDRPAESFQPRGTNSGPNPSPTLLFASKIDEKNTTISPTIHGGPHNLESGLSTPPTAFKTMDHQSGIMNKALPNLISSQPNFFASSQIGGSGGAVSQLRHRLASDAENTIYQPSVETQAMTSTSEKLKEKELTIEGGAISISSVYSKGLLDTLTQALQSSGVDLSQANISVQIELGKQANIRPNVPMSMCVTKDDEDPSKNQRKIRSRVSGSEKSDQALKKLKTCRS* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3117 567 MobiDBLite consensus disorder prediction 243 280 - -
Tpr5g3117 567 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 262 336 IPR036638 GO:0046983
Tpr5g3117 567 Gene3D - 261 336 IPR036638 GO:0046983
Tpr5g3117 567 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 264 314 IPR011598 GO:0046983
Tpr5g3117 567 MobiDBLite consensus disorder prediction 1 38 - -
Tpr5g3117 567 Pfam Helix-loop-helix DNA-binding domain 266 315 IPR011598 GO:0046983
Tpr5g3117 567 MobiDBLite consensus disorder prediction 236 280 - -
Tpr5g3117 567 MobiDBLite consensus disorder prediction 524 567 - -
Tpr5g3117 567 MobiDBLite consensus disorder prediction 19 38 - -
Tpr5g3117 567 SMART finulus 270 320 IPR011598 GO:0046983
Tpr5g3117 567 MobiDBLite consensus disorder prediction 533 567 - -
Tpr5g3117 567 PANTHER TRANSCRIPTION FACTOR BIM1 1 564 - -
Tpr5g3117 567 CDD bHLH_AtBIM_like 263 339 - -
Tpr5g3117 567 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 564 IPR044295 GO:0003700|GO:0006351|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3117 Tpr-Chr5 53964751 53973640 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3117 1 519 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 47.026 1.47e-122 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr5g3117 HLH 5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3117 - - gmx:100808016 841.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g3117 5 53964751 53973640 Tpr5g3117 5 53964751 53973640 ECH