LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr5g3108	ATGGGGAGAGGAAGAGTGCAATTGAAGAGGATAGAAAACAAGATCAATAGACAAGTAACTTTTTCAAAGAGAAGGTCTGGTTTGTTGAAGAAAGCACATGAGATCTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATAGTTTTCTCTACTAAAGGCAAACTTTATGATTACTCTAGTGATCCATGTATGGAAAGAATTCTCGAACGATATGAGAGATATTCTTATACGGAGAGGCAGCTTGTTACCAATGATCAGTCACCAAATGAAAATTGGGTTCTAGAACATGCAAAACTGAAGGCTAGAATGGAAGTACTTCAAAGAAATCAAAGGAATTATATGGGAGAGGATTTGGATGGCTTAAGTCTCAAAGAGCTTCAAAATTTGGAACAACAACTTGATTCCTCTCTCAAACACATTAGATCACGAAAGAATCAAGTCATGTATGAATCTATTTCAGAACTTCAGAAAAAGGATAAGGCACTCCAGGAACACAACAACTTGCTTTCCAAGAAGATAAAGGAAAAAGAGAAGCAACTTGCTCAAGAGGAGCAGCAAAATAGTATGGAGGTGAATCCAATTGAAACTCAACAATTGGAATCCATGATAATTCCTGCAGGAGGCTCTTTACAAGGGAAATTTAATGAAGAAAATGCAGCAAAAACTCAAGGTAGTGCCATTAATCTTCCATCTTGGATGATTCGTCCTATAAATGAATAG	717	0.3696	MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLYDYSSDPCMERILERYERYSYTERQLVTNDQSPNENWVLEHAKLKARMEVLQRNQRNYMGEDLDGLSLKELQNLEQQLDSSLKHIRSRKNQVMYESISELQKKDKALQEHNNLLSKKIKEKEKQLAQEEQQNSMEVNPIETQQLESMIIPAGGSLQGKFNEENAAKTQGSAINLPSWMIRPINE*	239

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr5g3108	238	Gene3D	-	13	86	IPR036879	GO:0003677\|GO:0046983
	Tpr5g3108	238	Coils	Coil	88	115	-	-
	Tpr5g3108	238	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	1	191	-	-
	Tpr5g3108	238	Pfam	K-box region	83	172	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Tpr5g3108	238	ProSiteProfiles	K-box domain profile.	88	178	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Tpr5g3108	238	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Tpr5g3108	238	PANTHER	AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG	1	191	-	-
	Tpr5g3108	238	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Tpr5g3108	238	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Tpr5g3108	238	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Tpr5g3108	238	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Tpr5g3108	238	CDD	MADS_MEF2_like	2	75	IPR033896	GO:0000977\|GO:0045944
	Tpr5g3108	238	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Tpr5g3108	238	SUPERFAMILY	SRF-like	2	92	IPR036879	GO:0003677\|GO:0046983
	Tpr5g3108	238	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Tpr5g3108	238	Coils	Coil	165	185	-	-
	Tpr5g3108	238	Coils	Coil	122	145	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr5g3108	Tpr-Chr5	53878229	53884529	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr5g3108	1	185	MADS-box Gene Family	AT1G26310	66.845	1.02e-87	258

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Tpr5g3108		K-box	4.4e-30	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr5g3108	K09264		K09260	gmx:100816836	320.472

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr2g0211	2	2757751	2765315	Tpr5g3108	5	53878229	53884529	ECH
	Tpr5g3108	5	53878229	53884529	Tpr5g3108	5	53878229	53884529	ECH