Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3107 ATGGGAAGAGGGAGAGTTGAATTAAAGAGAATAGAGAACAAAATTAACAGACAAGTTACTTTTGCAAAGAGAAGAAATGGTGTACTCAAGAAAGCTTATGAGCTTTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCTAACCGTGGAAAGCTCTATGAATTCAGCAGCACCTCTAGCATGATGAAAACATTGGACAAATACCACAAGTACAGCTATAATGAATTGGAGACCAACCAGCCAGCCAATGCCACTCAGAATTATCAGGATTATGTGAGATTAAAAGAGAATGTAGAAACCTTACAACGTTCCCAAAGGAAACTTCTTGGCGAAGATATTGCACAAATGAATACAAGTGAGCTCGAGCAGGTTGAAAATCAATTGGAGACAGCACTTAAGAATATAAGATCAACAAAGACTCAATTCATGCTTGATCAACTTGCCGATCTTCACATTCGGGAAACTCAACTTGTTGAAACAAATAATGCTTTAAGAAGTAAGCTTGAAGAAACTGATCATAACTCACAAGTTCGAGGTAGAATGTTGGCTCTTGGGTCTAACTTCCATCACACACGCTTTCCTCTTCAACATGTGGGAGTCAATTCCAACTTGCAATTTGGATACAATCCAATGGATTCTAATGATGTAAATGTTGGAGCTTCATCCTTAAGTATGAATGGATTCACCTCTGTGACGTGGACGCTTTGA 714 0.3852 MGRGRVELKRIENKINRQVTFAKRRNGVLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSSMMKTLDKYHKYSYNELETNQPANATQNYQDYVRLKENVETLQRSQRKLLGEDIAQMNTSELEQVENQLETALKNIRSTKTQFMLDQLADLHIRETQLVETNNALRSKLEETDHNSQVRGRMLALGSNFHHTRFPLQHVGVNSNLQFGYNPMDSNDVNVGASSLSMNGFTSVTWTL* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3107 237 Coils Coil 93 113 - -
Tpr5g3107 237 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr5g3107 237 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Tpr5g3107 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr5g3107 237 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tpr5g3107 237 Gene3D - 13 108 IPR036879 GO:0003677|GO:0046983
Tpr5g3107 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr5g3107 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr5g3107 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr5g3107 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tpr5g3107 237 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 224 - -
Tpr5g3107 237 Coils Coil 116 143 - -
Tpr5g3107 237 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr5g3107 237 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr5g3107 237 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Tpr5g3107 237 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3107 Tpr-Chr5 53868161 53874187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3107 1 172 MADS-box Gene Family AT5G15800 67.816 8.45e-79 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr5g3107 K-box 5.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3107 K09264 K09260 gmx:100797819 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g3107 5 53868161 53874187 Tpr5g3107 5 53868161 53874187 ECH