Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3106 ATGGAATCTTGGAGTTATATTTCTGAAGAAAAGGGTTATGTCTCTAATGAGAATCAATGTTCTGAAGAAATGGGTTTTTGTGAAATCTTAGGGAAACAATTTTCTGATGATTTCAATTTCATTGGAAGTGTTTCAAGTAGGAAACTTGATGATAAATTTGGTGACCCAAATGAATTATCTGTAAAAGGGGAAACCAATTTCAAGTTTTCAAATTCAAACTCTATGGTGGAATCTAATGGTTGGGATTCTCTCATTGATTTGAAGCTAGGACATTTTGGTAATCATGGAGATGCTATTAGTATTGGTGCTGCATTTTCCAAAGGAGTAGGATCAACTATTTTGTCTTCTTGTGAATCATCAATACCTCCTAAGAGAGTGAGAGTGCATTCAATGACTGCATATTGTCAAGTTTATGGATGTAACAAGGATCTTAGTTCTTGTAAAGATTATCATAAGAGGCACAAAGTTTGTGAGGTTCATTCCAAGACAGCTATAGTCATAGTGAATGGAATTGAGCAAAGGTTTTGTCAACAATGTAGTAGGTTTCATTTGCTGTCTGAATTTGATGATGGTAAGCGCAGTTGCCGTAAACGACTTGCAGGCCATAATGAGCGTAGAAGGAAACCACAAGTAGGCGTTCACTCTGCAAATTCCAGGAGATTGTTTCAGCCATGTGGTGATATCATATTTCAAGCAACCAAGGCACCACCAGCATCTTTTATCTGTCCGGAAGTGTTGCCAAATGGTTTCTGGAGACCTACGAAAACAGAACATGAAACCGGCTTTATGCATCTTTCTTCTGTGCCTATTACCAATGGACATCCTCAACAAAGATCTTCATTTGCTTCGTACAATGGAAAACAATTTCCCTTTCTTCATGAAAATGTTGCCACATCCACTACAGGCAGCATGTTTAGTGAAAACAATAATAGCCATTATGTGCATTCCGTTGGAGACACCTATTTAGGAAGTGGAGAATTCAAGGTTTTTCATACATCATCAACCGTTCGAGGATTATCTGGAGCCTCAGACACTTGTGCTCTCTCTCTTCTGTCATCTCAATCCAAGAACACTTCAAGCCAATCATCGGGAATTCCCTTTGATCAGCCTTTGGTTATTCCAAGCAGCCATGAACATCTCTACAGCATAAGATCACAGACAACTTCCTCAAGCCAATTTTATGATAGATTTCCATCGGAATTAAATCCTCCAGATGGAAATCATCTCAGTCCTATACTGATATCAGACAATAATGATATTGTGAACTTTGAAATTGTAGATGAGATCTTCCAAGATTCTGATTTTGTGAATGCTAAAGACTGTCTTTCATGTGAAGATGATGCAACCATTGACTTACTACAGCTGTCGACACAGCTTCAACGAGTTGAGCATCGCAGACAATCTTTTCAGGTGAAGAATGAGAGTGATTCTTCTTGCACTCTCCGGATTACTTAA 1455 0.3835 MESWSYISEEKGYVSNENQCSEEMGFCEILGKQFSDDFNFIGSVSSRKLDDKFGDPNELSVKGETNFKFSNSNSMVESNGWDSLIDLKLGHFGNHGDAISIGAAFSKGVGSTILSSCESSIPPKRVRVHSMTAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTAIVIVNGIEQRFCQQCSRFHLLSEFDDGKRSCRKRLAGHNERRRKPQVGVHSANSRRLFQPCGDIIFQATKAPPASFICPEVLPNGFWRPTKTEHETGFMHLSSVPITNGHPQQRSSFASYNGKQFPFLHENVATSTTGSMFSENNNSHYVHSVGDTYLGSGEFKVFHTSSTVRGLSGASDTCALSLLSSQSKNTSSQSSGIPFDQPLVIPSSHEHLYSIRSQTTSSSQFYDRFPSELNPPDGNHLSPILISDNNDIVNFEIVDEIFQDSDFVNAKDCLSCEDDATIDLLQLSTQLQRVEHRRQSFQVKNESDSSCTLRIT* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3106 484 SUPERFAMILY SBT domain 133 213 IPR036893 GO:0003677|GO:0005634
Tpr5g3106 484 PANTHER 1 PROTEIN, PUTATIVE-RELATED 15 484 - -
Tpr5g3106 484 Gene3D - 131 196 IPR036893 GO:0003677|GO:0005634
Tpr5g3106 484 Pfam SBP domain 135 208 IPR004333 GO:0003677
Tpr5g3106 484 ProSiteProfiles Zinc finger SBP-type profile. 132 209 IPR004333 GO:0003677
Tpr5g3106 484 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 15 484 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3106 Tpr-Chr5 53848926 53853056 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3106 85 247 SBP-box Gene Family AT1G69170 50.888 1.40e-45 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tpr5g3106 SBP 3.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3106 - - gmx:100817547 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g3106 5 53848926 53853056 Tpr5g3106 5 53848926 53853056 ECH